KEGG   Perognathus longimembris pacificus (Pacific pocket mouse): 125361532
Entry
125361532         CDS       T08928                                 
Symbol
Traf6
Name
(RefSeq) TNF receptor-associated factor 6
  KO
K03175  TNF receptor-associated factor 6 [EC:2.3.2.27]
Organism
plop  Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04010  MAPK signaling pathway
plop04064  NF-kappa B signaling pathway
plop04120  Ubiquitin mediated proteolysis
plop04140  Autophagy - animal
plop04144  Endocytosis
plop04380  Osteoclast differentiation
plop04620  Toll-like receptor signaling pathway
plop04621  NOD-like receptor signaling pathway
plop04622  RIG-I-like receptor signaling pathway
plop04657  IL-17 signaling pathway
plop04722  Neurotrophin signaling pathway
plop04936  Alcoholic liver disease
plop05132  Salmonella infection
plop05133  Pertussis
plop05135  Yersinia infection
plop05140  Leishmaniasis
plop05142  Chagas disease
plop05145  Toxoplasmosis
plop05152  Tuberculosis
plop05160  Hepatitis C
plop05161  Hepatitis B
plop05162  Measles
plop05168  Herpes simplex virus 1 infection
plop05169  Epstein-Barr virus infection
plop05170  Human immunodeficiency virus 1 infection
plop05171  Coronavirus disease - COVID-19
plop05200  Pathways in cancer
plop05222  Small cell lung cancer
plop05235  PD-L1 expression and PD-1 checkpoint pathway in cancer
plop05417  Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:plop00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    125361532 (Traf6)
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    125361532 (Traf6)
   04064 NF-kappa B signaling pathway
    125361532 (Traf6)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    125361532 (Traf6)
   04140 Autophagy - animal
    125361532 (Traf6)
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    125361532 (Traf6)
   04621 NOD-like receptor signaling pathway
    125361532 (Traf6)
   04622 RIG-I-like receptor signaling pathway
    125361532 (Traf6)
   04657 IL-17 signaling pathway
    125361532 (Traf6)
  09156 Nervous system
   04722 Neurotrophin signaling pathway
    125361532 (Traf6)
  09158 Development and regeneration
   04380 Osteoclast differentiation
    125361532 (Traf6)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    125361532 (Traf6)
   05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
    125361532 (Traf6)
  09162 Cancer: specific types
   05222 Small cell lung cancer
    125361532 (Traf6)
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    125361532 (Traf6)
   05161 Hepatitis B
    125361532 (Traf6)
   05160 Hepatitis C
    125361532 (Traf6)
   05171 Coronavirus disease - COVID-19
    125361532 (Traf6)
   05162 Measles
    125361532 (Traf6)
   05168 Herpes simplex virus 1 infection
    125361532 (Traf6)
   05169 Epstein-Barr virus infection
    125361532 (Traf6)
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    125361532 (Traf6)
   05135 Yersinia infection
    125361532 (Traf6)
   05133 Pertussis
    125361532 (Traf6)
   05152 Tuberculosis
    125361532 (Traf6)
  09174 Infectious disease: parasitic
   05145 Toxoplasmosis
    125361532 (Traf6)
   05140 Leishmaniasis
    125361532 (Traf6)
   05142 Chagas disease
    125361532 (Traf6)
  09166 Cardiovascular disease
   05417 Lipid and atherosclerosis
    125361532 (Traf6)
  09167 Endocrine and metabolic disease
   04936 Alcoholic liver disease
    125361532 (Traf6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:plop04131]
    125361532 (Traf6)
   04121 Ubiquitin system [BR:plop04121]
    125361532 (Traf6)
Enzymes [BR:plop01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     125361532 (Traf6)
Membrane trafficking [BR:plop04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Ubiquitin E3 ligases
    125361532 (Traf6)
Ubiquitin system [BR:plop04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    125361532 (Traf6)
SSDB
Motif
Pfam: TRAF-mep_MATH MATH_2 zf-TRAF TRAF6_Z2 zf-C3HC4_2 zf-C3HC4 zf-RING_UBOX zf-RING_2 zf-C3HC4_3 zf-C3HC4_4 zf-TRAF_2 zf-RING_5 SlyX TRAF3_RING RING_XB3-XBAT31 zf-RING_11 DUF4455 U-box Spc29 DUF16 DUF7607 DUF7310 PspA_IM30 Med21 TMF_DNA_bd EzrA Myosin_tail_1 Sina_ZnF Lzipper-MIP1 DUF1664 UPF0242
Other DBs
NCBI-GeneID: 125361532
NCBI-ProteinID: XP_048216011
LinkDB
Position
13:complement(39330211..39352236)
AA seq 529 aa
MSLLNCENSCESSQSESDCCAAMASSCSTSAKDDSVSSTPSTGNLSSSFMEEIQGYDVEF
DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD
NFAKREILSLMVKCPNEGCLHKMELRHLEDHKAHCEFALMNCPQCQRPLPKFQFNIHILE
DCPRRQVSCINCAVSMAFEEKEIHDQNCPLANVICEYCNTMLIREQMPNHYDLDCPTAPI
PCTFSTFGCHEKMQRNHLARHLQENTQSHMRMLAQAVHSINLALPTYDNSLPRAYDPDVQ
NFMETIQHLEGRLVRQDHQIRELTAKMETQSMYVSELKRTIRSLEDKVAEIEAQQCNGIY
IWKIGNFGMHLKSQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHT
MQGEYDSHLPWPFQGTIRLTILDQSEAPIRQNHEEVMDAKPELLAFQRPTIPRNPKGFGY
VTFMHLEALRQRTFIKDDTLLVRCEVSTRFDMGSLRKEGFQPRSTDTGV
NT seq 1590 nt   +upstreamnt  +downstreamnt
atgagtctgttaaactgtgaaaacagctgtgagtccagccagtctgaaagtgactgctgt
gccgccatggccagctcctgcagcacctcagcgaaagatgacagtgtgagcagcactccc
agcacagggaacctctcgagctccttcatggaagagatccagggctatgatgtagagttc
gacccaccactggaaagcaaatacgaatgccccatttgcttgatggctttacgggaagcc
gtgcagacaccatgtggccacaggttctgtaaagcctgcatcatcaaatctatcagggat
gcaggtcacaagtgtccggtggacaatgaaatcctattggaaaaccaactgtttcccgac
aattttgcaaaacgagagattctttctctgatggttaagtgtccaaatgaaggttgtctg
cacaaaatggaactgagacatcttgaggatcataaagctcattgcgagtttgctcttatg
aattgtccccaatgccagcgtcccttgccgaaattccaatttaatattcacattctcgag
gattgtccaaggagacaagtttcttgtattaactgtgctgtatccatggcatttgaagag
aaagagatccatgaccagaactgccctttggcaaatgtcatctgtgaatactgcaatacc
atgctcatcagagaacagatgcctaatcattatgatctagactgtcctacagccccaatc
ccatgcacattcagtacctttggttgccatgaaaagatgcagagaaatcacttggcacgc
catctgcaagagaatacacagtcacacatgagaatgctggcccaggctgttcacagtata
aacctcgctttacccacctatgataactctctgccacgggcttatgacccagatgtccag
aacttcatggaaaccattcagcatttagaaggtcgccttgtaagacaggaccatcaaatc
cgagagctgactgctaaaatggaaactcaaagtatgtacgtgagtgagctcaaacgaacc
atacgtagccttgaggacaaagttgctgaaattgaagcacagcagtgcaatgggatttac
atttggaagatcggcaactttgggatgcacttgaaatctcaagaagaagagaaacctgtt
gtcattcatagccctggattctacacaggcaaacctgggtacaaactctgcatgcgcctg
cacctgcagttaccaactgctcagcgctgcgctaactacatatccctctttgtccacacc
atgcaaggtgagtatgacagccacctcccctggcccttccaaggtacaatacgcctcaca
attcttgatcagtctgaagcaccaatcaggcaaaaccatgaagaagttatggatgccaaa
ccagaacttcttgctttccagcggcctaccatcccacggaaccccaagggttttggctat
gtaacatttatgcatcttgaagccttaagacagagaaccttcattaaggatgacacatta
ttagtacgctgtgaagtctccacccgctttgacatgggaagccttcgaaaggagggcttc
cagccacgaagtactgacacaggggtatag

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