Perognathus longimembris pacificus (Pacific pocket mouse): 125362109
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Entry
125362109 CDS
T08928
Symbol
Ddx58
Name
(RefSeq) antiviral innate immune response receptor RIG-I isoform X1
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04064
NF-kappa B signaling pathway
plop04622
RIG-I-like receptor signaling pathway
plop04623
Cytosolic DNA-sensing pathway
plop05160
Hepatitis C
plop05161
Hepatitis B
plop05162
Measles
plop05164
Influenza A
plop05168
Herpes simplex virus 1 infection
plop05169
Epstein-Barr virus infection
plop05171
Coronavirus disease - COVID-19
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09130 Environmental Information Processing
09132 Signal transduction
04064 NF-kappa B signaling pathway
125362109 (Ddx58)
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
125362109 (Ddx58)
04623 Cytosolic DNA-sensing pathway
125362109 (Ddx58)
09160 Human Diseases
09172 Infectious disease: viral
05161 Hepatitis B
125362109 (Ddx58)
05160 Hepatitis C
125362109 (Ddx58)
05171 Coronavirus disease - COVID-19
125362109 (Ddx58)
05164 Influenza A
125362109 (Ddx58)
05162 Measles
125362109 (Ddx58)
05168 Herpes simplex virus 1 infection
125362109 (Ddx58)
05169 Epstein-Barr virus infection
125362109 (Ddx58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
plop04054
]
125362109 (Ddx58)
Enzymes [BR:
plop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125362109 (Ddx58)
Pattern recognition receptors [BR:
plop04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
125362109 (Ddx58)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C
RIG-I_C-RD
DEAD
ResIII
Helicase_C
MC7
VPS11_C
AAA_25
HrpE
Motif
Other DBs
NCBI-GeneID:
125362109
NCBI-ProteinID:
XP_048216761
LinkDB
All DBs
Position
1:complement(128504639..128547867)
Genome browser
AA seq
921 aa
AA seq
DB search
MTADQRRNLRVFQDYVQKILDPTYILPYMAPWLGDDQMQYIRVQKDSKGPMEAASLFLQY
LLELQEEGWFRGFLDALFQAGYSGLHEAIETWDFQKIEKLEEHRALLRRLQPEFKDRISP
LDILPDMSECLIRQECEEIQQICSNKGMMAGAEKMAECLIRSDKENWPKLLKLALEKEEN
TFSQLWCAEEGLKDVEDDRMEASSIEIFIQEDPDYLTFSQNSCPHSDVAHTSLISPLKPR
NYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPAGQKGKVAFFANQVPVYL
QQKSVFSMYFERLGYKVAGISGATTESVPVQQTIENNDIIILTPQILVNSLKQGSIPSVS
VFTLMIFDECHNTNKHHPYNMIMFNYLDQKLGGPLGPLPQVLGLTASVGVGDAKTIEEAM
SYICRLCAALDASVIATIRENMEELEEIVYKPQKLFRKVESRTTDKFKVIISQLMKETEF
LAKNVSEELGHLFEIQNREIGTQKYEQWIVGVHKECKVFQMADKEEESRICKALFLYTSH
LRRYNDALIISEHAQMKDALNYLKDFFNNVRSAGFDEIEQDLTRRFEEKVQELESISLDP
SNENPKLKDLYLILQEEYHVNPESKTILFVKTRALVDALKNWIEENSALSFLKPGILTGR
GRTGEATGMTLPTQKCVLDAFRANSNNNILIVTSVADEGIDIAQCNLIILYEYVGNVIKM
IQTRGRGRARGSKCFLLTSSAAVIEKEQMNLYKEKMMDESISRLQAWDEARFEREIQKIQ
IDEKSIRDRQQKLKPAPVKENKKLLCGKCKALVCYTADVRVIEDCHYTVVGNAFKEHFVS
KPHPKPKSYGSFEKKAKIFCARQDCNHDWGIYAKYNTLEIPIIKIQSFVVEDVTTRAQTW
YSKWTDFNYKWTPFAPTEMSQ
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcggatcagcggcggaacctgcgggttttccaagactatgtgcagaagatcctg
gaccccacctacatcttgccctacatggccccctggctgggggacgatcagatgcagtat
attagggtgcagaaagacagtaaaggcccgatggaggctgcttcactgttcctccagtac
ctgttggagctccaggaagaaggctggttccgtggatttttggatgccctattccaagca
ggttattctggacttcatgaagcaatcgaaacttgggatttccaaaaaattgaaaagtta
gaggagcatagagctcttttaagacgtttacagccagaatttaaagacagaattagtcca
ctagatatcctccctgatatgtcagaatgtttaattagacaggaatgtgaagaaattcaa
cagatatgctccaataaaggaatgatggcaggtgcagagaaaatggctgaatgccttatc
agatcagataaagagaactggcccaagcttttgaaacttgctttggagaaagaagagaac
acattcagtcaactgtggtgtgctgaggaaggtctgaaagatgttgaagatgacagaatg
gaagcttccagcatagagattttcatccaggaggatccagactacctgacttttagtcag
aattcctgcccacattcagatgtggcgcataccagcttaatcagcccattaaaaccacga
aattaccaactagagcttgctttgcctgccaagaaaggaaaaaatacaataatatgtgct
cctactggttgtggaaaaactttcgtttcacttcttatttgtgaacatcatctcaaaaaa
tttccagcaggacaaaaagggaaagttgccttttttgctaatcaggttcctgtgtactta
cagcagaagtccgtgttctccatgtattttgaaagacttgggtacaaagttgcaggcatt
tctggagcaacaactgagagtgttcctgtgcagcagacgattgagaacaatgacatcatc
attttaaccccacagattcttgtgaacagtcttaagcaaggaagcattccgtcagtgtct
gttttcactttgatgatatttgacgaatgccacaataccaataaacaccacccatacaac
atgatcatgttcaactacctagatcagaaacttggaggacctttgggtccactgccccag
gttttgggtctgaccgcctcggtgggcgttggagatgccaagaccattgaggaagccatg
tcatacatctgcagactgtgtgctgctcttgatgcgtctgtgatcgccaccatcagagag
aacatggaggaactggaggaaatcgtgtataaacctcagaaacttttcaggaaagtagaa
tcacggactactgacaaatttaaagtcatcatctctcaattgatgaaggagacagagttt
ctggcaaagaatgtctctgaagaacttggacacttatttgagatccaaaacagggaaatt
ggaacacagaaatatgaacagtggattgttggggttcataaagagtgtaaggtgtttcag
atggccgacaaggaggaagagagcaggatttgcaaagcactcttcctgtacacttcacat
ctgaggagatacaatgatgctctcattatcagtgaacatgcacaaatgaaagatgctttg
aattatctgaaagacttcttcaacaatgtccgatcagcaggatttgatgagattgagcaa
gatcttactcggaggtttgaagaaaaggtacaagaattagaaagtatttccttggatcct
agcaacgagaaccctaaactcaaagacctctatttgatcctacaagaagaataccatgta
aatccagagtcaaaaaccattctctttgtgaaaaccagagccctcgtggatgctttaaag
aactggatcgaagaaaattctgctctgagctttctaaaacctggcatattgacaggacgt
ggcagaacaggtgaagcaacaggaatgaccctccccacacagaagtgtgtattggatgcc
ttcagagccaacagcaataacaatattctcattgtcacctcggttgctgacgaaggcatt
gacatcgcccagtgcaatctgatcatcctgtatgagtacgtgggcaacgtcatcaaaatg
atccaaaccagaggcagaggaagagcaagaggtagcaagtgcttccttttgacaagcagt
gctgctgtaattgaaaaagaacagatgaacttgtataaggaaaaaatgatggatgaatcc
atttccagacttcaggcatgggatgaagcacggtttgaaagagagattcagaagatacag
attgatgaaaaatccatcagagatcgccaacaaaagctcaaacctgcacctgtgaaggag
aataaaaaactgctgtgtggcaagtgcaaggccttggtgtgctacacagctgatgtccgg
gtgatagaggattgccattacactgtagttggaaatgccttcaaggagcactttgtgagt
aaaccacatcccaagccaaagagctatggaagttttgagaagaaagcaaagatattctgt
gccagacaagactgcaaccatgactggggaatctatgcaaagtataatacgcttgagatt
ccaatcatcaaaatccaaagttttgtggtagaggatgtcacaaccagagctcagacatgg
tactcaaagtggacagacttcaactacaagtggacaccatttgccccaacagagatgtcc
caatga
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