Perognathus longimembris pacificus (Pacific pocket mouse): 125362359
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Entry
125362359 CDS
T08928
Symbol
Kdm2a
Name
(RefSeq) lysine-specific demethylase 2A isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
125362359 (Kdm2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
plop03000
]
125362359 (Kdm2a)
04121 Ubiquitin system [BR:
plop04121
]
125362359 (Kdm2a)
03036 Chromosome and associated proteins [BR:
plop03036
]
125362359 (Kdm2a)
Enzymes [BR:
plop01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
125362359 (Kdm2a)
Transcription factors [BR:
plop03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
125362359 (Kdm2a)
Ubiquitin system [BR:
plop04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
125362359 (Kdm2a)
Chromosome and associated proteins [BR:
plop03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
125362359 (Kdm2a)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
125362359 (Kdm2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
JmjC
Cupin_8
LRR_4
Cupin_1
Motif
Other DBs
NCBI-GeneID:
125362359
NCBI-ProteinID:
XP_048217147
LinkDB
All DBs
Position
13:59471555..59576850
Genome browser
AA seq
1162 aa
AA seq
DB search
MEPEEERIRYSQRLRGTMRRRYEDDGISDDEIEGKRTFDLEEKLHTNKYNANFVTFMEGK
DFNVEYIQRGGLRDPLIFKNSDGLGIKMPDPDFTVNDVKMCVGSRRMVDVMDVNTQKGIE
MTMAQWTRYYETPEEEREKLYNVISLEFSHTRLENMVQRPSTVDFIDWVDNMWPRHLKES
QTESTNAILEMQYPKVQKYCLMSVRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHN
LELYENWLLSGKQGDIFLGDRVSDCQRIELKQGYTFVIPSGWIHAVYTPTDTLVFGGNFL
HSFNIPMQLKIYSIEDRTRVPNKFRYPFYYEMCWYVLERYVYCITNRSHLTKEFQKESLS
MDLELNGLESGNGDEEGMDRESRRLNSRRSVLTSPVPNGINLDYDGLGKTCRSLPSLKKP
LSGDSSSDSGRGSHNGQVWDHQCSPRKDRQVHLTHFELEGLRCLVDKLESLPLHKKCVPT
GIEDEDALIADVKILLEELANSDPKLALTGVPIVQWPKRDKLKFPTRPKVRVPTIPITKP
HTMKPAPRLTPVRPAAASPIVSGARRRRVRCRKCKACVQGECGVCHYCRDMKKFGGPGRM
KQSCVLRQCLAPRLPHSVTCSLCGEVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEG
LLNEELPNCWECPKCYQEDSSEKSQKRKMEETDEEAVQAKVLRPLRSCEEPLTPPPHSPT
SMLQLIHDPASPRGTVTRSSPGAGPSDHHSASRDERFKRRQLLRLQATERTMVREKENNP
SGKKELSEVEKAKIRGSYLTVTLQRPTKELHGTSIVPKLQAITASSANLRHSPRVLVQHC
PARTPQRGDEEGLGGEEEEEEEEEEEDDSAEEGGAARLNGRGNWAQDGDESWMQREVWMS
VFRYLSRRELCECMRVCKTWYKWCCDKRLWTKIDLSRCKAIVPQALSGIIKRQPVSLDLS
WTNISKKQLTWLVNRLPGLKDLLLAGCSWSAVSALSTSSCPLLRTLDLRWAVGIKDPQIR
DLLAPPADKPGQDNRSKLRNMTDFRLAGLDITDATLRLIIRHMPLLSRLDLSHCSHLTDQ
SSNLLTAVGSSTRYSLTELNMAGCNKLTDQTLIYLRRIANVTLIDLRGCKQITRKACEHF
ISDLSINSLYCLSDEKLIQKIS
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atggaacccgaagaagaaaggattcgttacagccagagattgcgtggcaccatgagacga
cgatatgaagatgatggcatttcagatgatgaaattgaaggaaaaagaacctttgactta
gaagagaaactccacaccaacaaatataatgctaattttgttacttttatggagggaaaa
gattttaatgttgaatacatacaacggggaggcttaagagatcctctgattttcaagaat
tctgatggacttggaataaaaatgcctgatccagacttcactgtgaatgacgtcaaaatg
tgtgtggggagtcgtcggatggtggatgttatggatgtgaacacacaaaaaggcattgaa
atgaccatggctcagtggacacgctactatgagacaccagaagaagagcgagagaaactc
tataatgttatcagcctggaatttagccataccaggctggagaacatggtacagaggcct
tccacggtggatttcattgactgggtagacaacatgtggccaaggcatttgaaggaaagt
cagacggaatcaacaaatgccattttagagatgcagtatcctaaagtgcagaagtactgt
ctaatgagtgttcgaggctgctatactgacttccatgtggactttggtggtacttctgtt
tggtatcacatccaccaaggtggaaaggtcttctggctcatcccccctacagcccacaac
ctggagctgtacgagaattggctgctgtcagggaaacagggagacatctttctgggtgac
cgggtgtcagattgccaacgcattgagctcaagcagggctataccttcgtcattccttca
ggctggattcatgctgtgtatactcctacagatacattagtgttcggaggcaatttctta
cacagctttaacatccccatgcagttaaagatatacagcattgaagatcggacacgggtt
ccaaataaattccgttatccattctactatgagatgtgttggtacgtgttggagcgctat
gtgtactgtataaccaaccgctcccacctaaccaaggaatttcagaaagaatccctcagc
atggatttggagttaaatggattagagtctgggaatggagatgaggaaggaatggatcga
gaatcccgccgcttgaacagtaggcgctctgttctcactagccctgtacctaatggaatc
aacctggattatgatggactgggcaaaacctgccgaagtcttccaagtctgaagaaaccg
ttgtctggagactcttcctctgactcaggtcggggctcccacaatggccaagtgtgggat
caccagtgtagtccccgaaaggacaggcaagtgcatctgacccattttgagcttgaaggc
cttcgctgccttgtagataagttggagtctcttccactgcacaagaagtgtgtacccaca
gggatagaagatgaagatgctctcattgctgatgtaaagattttgctggaggagcttgcc
aacagtgaccccaagttagccttgactggagttcctatagtacagtggccaaaaagggat
aagcttaaattccccaccaggccaaaggtgagggttcctaccatccccatcacaaaacct
cacaccatgaagccagctccacggctaacacctgttcggcctgcagctgcctctcccatt
gtgtcaggagccaggcggagaagagtgcgctgtcggaaatgcaaagcctgtgtgcagggg
gaatgtggtgtttgccactactgcagggacatgaagaagtttgggggccctggacgcatg
aagcagtcctgtgtccttcgacagtgcttagcacccagattgcctcactctgtcacatgt
tccctgtgtggagaggtagatcaaaatgaagagacacaggactttgagaaaaaacttatg
gaatgctgtatctgcaatgagatcgtgcatcccggctgcctgcagatggatggagaaggg
ttgcttaatgaggaattgccaaattgctgggagtgtccaaagtgttaccaggaggacagc
tcagagaaatcccagaagcggaaaatggaagaaacggatgaagaagctgtgcaagccaaa
gtcttgcggcccctgcggagctgcgaggagcctctcactcccccgcctcactcccccacc
tccatgctgcagctcatccacgaccccgcctctccccggggtacagtgactcggtcgtcc
cctggggctggccccagcgaccatcacagtgccagccgcgatgagcgcttcaaacggcgg
cagttgctgcggctgcaggccacagagcgcaccatggtacgggaaaaggagaacaatccc
agcggcaaaaaggagctgtctgaagttgagaaagccaagatccggggatcgtacctcact
gtcacgctacagaggcccaccaaagagctccacgggacatccattgtgcccaagctgcag
gccatcacggcctcctctgccaacctccgccattccccccgcgtgctagtgcagcactgc
ccagcccgaacgccccaacgtggggatgaggaggggctggggggagaggaggaagaggag
gaggaggaggaggaggaagatgacagtgcagaggaggggggtgcggccaggctgaatggc
cggggcaattgggctcaggatggagacgaaagctggatgcagcgggaggtctggatgtct
gtcttccgctacctcagccgcagagaactttgtgaatgtatgcgagtgtgcaagacgtgg
tataaatggtgctgtgacaagagactttggacaaaaattgacttgagtaggtgtaaggcc
atcgtaccccaggctctcagtggcatcatcaagagacagccagttagtcttgacctcagt
tggaccaacatctccaaaaagcagttgacatggctggtcaataggttgccaggactgaaa
gacctcctcctagctggctgttcttggtctgctgtctctgccctcagcacttccagctgc
cccctcctcaggacccttgatcttcggtgggcagtaggaattaaggaccctcaaattcga
gacttgctggctccaccagctgataaaccaggtcaggacaatcgcagcaagcttcggaac
atgacggacttccggctggccggccttgacatcacggatgccacccttcggctcatcatt
cgccatatgcccctcctgtctcgactcgaccttagccattgcagccaccttacagaccag
tcctccaacctcctcaccgcagttgggtcctccacacgttactccctcacagagctcaat
atggcaggttgcaataaattgacagaccagaccctgatctacctacgacgcatagccaat
gtcaccttgattgaccttcgaggatgcaagcagatcactcgaaaagcctgtgagcacttc
atctcagacttgtccatcaacagcctgtactgcctgtctgatgagaagctgatacagaag
atcagctaa
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