Perognathus longimembris pacificus (Pacific pocket mouse): 125365628
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Entry
125365628 CDS
T08928
Symbol
Nlrp1
Name
(RefSeq) NACHT, LRR and PYD domains-containing protein 1
KO
K12798
NACHT, LRR and PYD domains-containing protein 1
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
125365628 (Nlrp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
plop04131
]
125365628 (Nlrp1)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
plop04054
]
125365628 (Nlrp1)
Membrane trafficking [BR:
plop04131
]
Autophagy
Other autophagy associated proteins
TRIM-directed selective autophagy
125365628 (Nlrp1)
Pattern recognition receptors [BR:
plop04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
125365628 (Nlrp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FIIND
NACHT
UPA-FIIND
CARD
NLRC4_HD2
NOD2_WH
LRR_6
AAA_16
NB-ARC
AAA_14
AAA
LRR_4
AAA_22
NPHP3_N
ABC_tran
nSTAND3
AAA_30
RsgA_GTPase
AAA_33
Birna_VP5
AAA_24
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
125365628
NCBI-ProteinID:
XP_048221773
LinkDB
All DBs
Position
17:complement(8620489..8658142)
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AA seq
1171 aa
AA seq
DB search
MAGRSYRFSALSSDPSEDEEETEGNYGALPVTPGQFSIVEENICPQPSSARKETKEKLQN
QKTEEEPSPAHSWKNEDLKQKFTQLLLLEKPYLRSQELLCKESWFQDEVKEPGHLIDIGD
LFGPGPGPQEEPQTVVLHGPAGIGKSTLARQVKGAWEEGRLYKDHFQHIVFISCRELDQH
KVLSLEEVIMKDLSIHHKETIARPKQLLFILDDVDELQLVVEEMESYLCVHWSQPQLVYT
LVCSLLGRSILPEASLLITAQTTALQDLIPFLKRPRLVEVLGFSESSRKEYFNKYFSEES
QALKALSLVEWNPMLWTLCLVPWVSWMVCACLKQQMEQGEQRPLTPQTTTALCLHFLAQA
LPAQTLGTQLRRICSLAAEGIRESKTLFSMDDLSRCGLDSTIIITFSEINVVQKHDQPQR
YSFVHSCFQAFFAAMSFVLVYEEKSRDSPGHVAEMIRSIQDYRSHLLMPPTISFLFGLLS
EPAVDMLEMIFTCKLRRLSSWDVWDWIQFEAPLQQPYSVEMFHFLYESQNERLLSSALGR
IKGTRMNIQTDVELLVVTFCLKFCRQVKRLQLSEGGQQGGAQRSSGVVLSTRAPLTDTSW
KVFFSTLKGSENLRELNLSGNLLSYSAVQSLCEMLRHPRCHLETLRLAHCGLTPSCCQDL
ASVLSTCSSLKNLDLRQNNLGDHGMMLLCEGLKQPFSHLLFLCLDLDLLSDLVKEELNSL
EQEKCELIISSRWKPSVMSSTEGQDGGEMSKSITSLKWQRQSPEEKAVQTELFHQPSPVS
LDDLKTEHMGKKFDFWGPAGPVAIEEVGKHRSLYRIYFPVAGFYHCPNMGLGFVVSRAVA
INIEFCSWDTFLDGTSLQHTWMVAGPLFDIRAKKGAVAAVYLPHFVALQGEHVDISQFQV
AHFTEEGMVLQKPARVEPHCAVLENPSFSPVGVLLRMIPKARRFIPITSTTLLYHHRHHE
DVTFHLYLVPYDCTIHKAIDDKEEKFQFMQIHKAPMQNSLYLGSRYTVSGSESLEIIPQE
LKFCYRSPGESQLFSEIYVANLGSGIMLQMSDKKDGALLWKAKVRPGDLSSATNVIPQAP
AEAPALLHFVDRHREQLVARVTSVDPVLDHLHGQVLSEEQYEQVRAEATRPEQMRKLFSF
SRSWDQTCKDQLYQALKEIHPHLIMELWERS
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atggctggtagatcctatcgtttctctgctctatcatctgatccttcagaagatgaagag
gaaacagaaggaaattatggagcacttccagttacacctggtcaattcagcattgttgaa
gagaacatctgcccccagcccagctcagcaaggaaagaaaccaaggagaaactccaaaat
cagaagacagaagaagagcccagcccagcacattcctggaaaaatgaggatttgaaacaa
aaattcacccaactattacttctagaaaaaccttacctcagaagccaggaactcctctgc
aaggaaagctggtttcaggatgaagtgaaggaaccaggacatttgattgacattggagat
ttatttggcccaggaccaggtccccaggaagaacctcaaacagtcgtactgcacgggcct
gctggaattgggaagtccactctggccaggcaggtgaagggagcctgggaggaagggcgt
ttgtacaaggatcacttccagcacatcgtcttcatcagctgcagggagctggaccaacac
aaggtgctgagtctggaagaggtcatcatgaaagacttgtctatccaccacaaggagact
atcgctaggccaaagcagctgctcttcatcttagatgatgtggatgaactacaattggtt
gtagaggagatggaatcatatctttgtgtgcattggagccagcctcagttggtatacaca
ctggtgtgcagtctgctggggagaagcatacttccagaggcttcattgctcatcacagct
cagaccacagctctacaggacctcatccctttcttaaagcgaccacgtctggtggaagtc
ctgggattctctgagtccagcaggaaggaatatttcaacaagtacttctccgaggagagc
caggcactcaaggccttgagcttggttgaatggaacccaatgctgtggactctgtgtctg
gtgccctgggtgtcctggatggtctgcgcatgcctgaagcagcagatggagcagggggag
cagcgcccactcaccccccagaccactacggccctctgtctgcacttccttgcccaggct
ctcccagcgcagaccctggggacccagctcaggaggatctgctcactggctgctgagggc
atccgagaaagcaagactctgttcagtatggatgacctcagcaggtgtggcttagatagc
accataattatcactttctcagagatcaatgttgttcagaaacatgaccagcctcagcgc
tacagcttcgttcattcttgcttccaggcattctttgcagcaatgtcctttgtcttggtg
tacgaagagaagagcagggactctcccggacatgtcgcagagatgataaggtcaatacaa
gattacagaagtcatctgttgatgccaccaaccataagcttcctatttggtcttttgagt
gaaccagcggtagacatgctggagatgatcttcacctgcaagctgcgtcgattgagttca
tgggacgtgtgggattggatccagtttgaggcccctctacagcagccatattctgtggag
atgttccactttctctacgagtctcagaatgagcgtctcctatcgtctgcactgggacgt
attaaaggaacaaggatgaatatccagacggatgtggagctcctggtggtcactttctgc
cttaagttctgcagacaagtgaagaggcttcagctgagtgagggtggccagcagggagga
gcacagaggtcctctggggtagttctgtccacacgagcccccctcactgacacatcgtgg
aaggttttcttctccactctcaagggcagtgagaatttgagggagctaaacctaagtggg
aacctactgagttactctgcagtgcagagtctttgtgagatgctgagacatccacgatgc
cacctggagaccttgaggctggcccactgtggcctcacccccagctgctgccaagacctg
gcctctgtgctcagcacttgctccagcctgaagaatctcgacctgcggcagaacaacctg
ggtgaccatggcatgatgctgctctgcgaggggctcaagcagcctttctctcacctcttg
ttcctgtgcttggacctggaccttctgagtgacctggtgaaggaggagctgaactccctg
gagcaagaaaaatgtgagctaatcatctccagcagatggaagccaagtgtgatgagctct
actgaaggccaagatggaggagagatgagtaagagcatcacctcactcaagtggcagaga
caatctccagaagaaaaagctgtgcagacagaacttttccatcagccttctcctgtctct
ctagatgacctgaaaacagagcatatggggaagaaatttgacttctggggccctgcaggg
cctgtggccattgaagaggttggaaagcacagaagcctgtaccgcatttacttccccgtg
gccggcttttaccactgtcccaacatgggtctgggctttgttgtgagcagggcagtggcc
atcaacattgaattctgttcttgggacacgttcctggatgggacttccctgcagcacacc
tggatggtagcggggcctctgtttgacatcagggctaaaaagggagctgtggctgctgtg
tatctccctcactttgtggccctccaaggtgagcatgtggacatctcccagttccaggtg
gcccactttacagaagaggggatggtcctgcagaagccagccagggtggagccgcactgc
gcagtccttgaaaaccccagcttctccccagtgggagttctgctgaggatgatccccaag
gcccggcgcttcatccccatcacctccaccacgttgctctaccaccatcgccatcatgaa
gacgtcaccttccatctctacctggtcccctatgactgcaccattcataaggccatagat
gataaagaagaaaagttccagttcatgcaaatacacaaggccccgatgcagaattccctt
tacctgggctctcgctatacagtgtctggttctgagtcgctggaaatcatcccccaggag
ctgaaattctgctaccggagccctggagaatctcaacttttctctgagatctatgttgcc
aacttgggttcaggaatcatgctacaaatgagcgataagaaagatggggctctcctgtgg
aaggccaaggtgagaccaggagacctcagcagtgcaaccaatgtgataccacaagctcca
gcagaggctccggccttgctgcactttgtggataggcatcgggagcagctggtggcccgg
gtgacatctgtggaccctgtcttggatcatctacatggacaggtgctgagtgaggagcag
tatgagcaggtgcgggctgaggccaccaggcctgagcagatgcggaagctgttcagcttc
agtcggtcctgggaccagacctgcaaagaccaactctaccaagccctgaaggagatccat
cctcacctaatcatggaactctgggagaggagttga
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integrated database retrieval system
