Perognathus longimembris pacificus (Pacific pocket mouse): 125365909
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Entry
125365909 CDS
T08928
Symbol
Scn4a
Name
(RefSeq) sodium channel protein type 4 subunit alpha
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
plop04040
]
125365909 (Scn4a)
Ion channels [BR:
plop04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
125365909 (Scn4a)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
IQ
Motif
Other DBs
NCBI-GeneID:
125365909
NCBI-ProteinID:
XP_048222168
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Position
17:complement(44495576..44518426)
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AA seq
1256 aa
AA seq
DB search
MDPFVDLGITICIVLNTLFMAMEHYPMTEHFDNVLSVGNLVFTGIFTAEMVLKLIAMDPY
EYFQQGWNIFDSIIVTLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGN
SVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKIASDCSLPRWHMYDFFHSFLIVF
RILCGEWIETMWDCMEVAGQAMCLTVFLMVMVIGNLVVLNLFLALLLSSFSADSLAASDE
DGEMNNLQIAIGRIKWGIGFAKTFLLGLLRGKVLSPKDIMLSLGEPGGTGEAGETGDSPP
EDEKKELPPDEGDKDLKKDNHILNHVGLANGTPTNIELDHLNFINNPYLTIQVPIASEES
DLEMPTEEETDTFSEPEDSKKPPQPLYDGNSSVCSTADYKPPEEDPAEQAEENPEGEQPE
ECFTEACVQRCPCLYVDISQGRGKKWWTLRRACFKIVEHNWFETFIVFMILLSSGALAFE
DIYIEQRRVIRTILEYADKVFTYIFILEMLLKWVAYGFKVYFTNAWCWLDFLIVDVSIIS
LVANWLGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFW
LIFSIMGVNLFAGKFYYCINTTTSERFDISEVNNKSQCESLMHTGQVRWLNVKVNYDNVG
LGYLSLLQVATFKGWMDIMYAAVDSREKEEQPQYEVNLYMYLYFVIFIIFGSFFTLNLFI
GVIIDNFNQQKKKFGGKDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPQNKIQGMVYDFVT
KQVFDITIMILICLNMVTMMVETDDQSELKIDILYNINMVFIIIFTGECVLKMFALRHYY
FTIGWNIFDFVVVILSIVGLALSDLIQKYFVSPTLFRVIRLARIGRVLRLIRGAKGIRTL
LFALMMSLPALFNIGLLLFLVMFIYSIFGMSNFAYVKKESGIDDMFNFETFGNSIICLFE
ITTSAGWDGLLNPILNSGPPDCDPTLENPGTSVKGDCGNPSIGICFFCSYIIISFLIVVN
MYIAIILENFNVATEESSEPLCEDDFEMFYETWEKFDPDATQFIDYSRLSDFVDTLQEPL
RIAKPNKIKLITLDLPMVPGDKIHCLDILFALTKEVLGDSGEMDALKQTMEEKFMAANPS
KVSYEPITTTLKRKQEEVCATKIQRAYRRHLLQRSVKQAAYLHRHGQDARGAPESTGLIA
SAMSKMYGPEDGEHGGQSRGEAGGSTGASPPDTAAPPSPAPPAGHAVRPGVKESLV
NT seq
3771 nt
NT seq
+upstream
nt +downstream
nt
atggaccccttcgtggacctgggcatcaccatctgcatcgtgctcaacaccctcttcatg
gccatggagcactaccccatgacggagcactttgacaacgtgctctctgtgggcaacctg
gtcttcactggtatcttcactgctgagatggtgctgaagctgatcgccatggacccctac
gagtatttccagcagggctggaacatctttgacagcatcattgtcaccctcagcctggtg
gagctgggcctggctaacgtgcaggggctgtccgtgctccgctccttccgcctgctgcgg
gtcttcaagctagccaagtcatggccaacactcaacatgctcatcaagatcatcggcaac
tcggtgggggcgctgggcaacctgaccctggtgctggccatcatcgtgttcatcttcgcc
gtggtgggcatgcagctgttcggcaagagctacaaggagtgcgtgtgcaagatcgcctcg
gactgcagcctgccccgctggcacatgtatgacttcttccactccttcctcatcgtcttc
cgcatcctgtgtggggagtggatcgagaccatgtgggattgcatggaggtagccggccag
gccatgtgcctcacggtcttcctcatggtcatggtcatcggcaacctggtggtcctgaac
ctgttcctggctctcctgctgagctccttcagcgccgacagcctggcagcctcggatgag
gacggcgagatgaacaacctgcagatcgccatcgggcgcatcaaatggggcattggcttc
gccaagaccttcctcctggggctgctgcgcggcaaggtgctgagccccaaggacataatg
ctcagtctaggggagcccggcggcaccggagaggctggagagactggggacagcccccct
gaggatgagaagaaggagctacctcctgatgagggggacaaggacctgaaaaaggacaat
cacatcctcaaccacgtgggcctggctaatggcactcctaccaacatcgagctggaccac
ctcaacttcatcaacaacccttacctgaccatccaggtgcccatcgcctcggaggagtcg
gatctggagatgcccaccgaggaagagaccgacacattctcagagcctgaggacagcaag
aagcccccacagcccctctacgatgggaactcctcggtctgcagcactgctgactacaag
ccccccgaggaagaccccgcggagcaggccgaggagaaccccgagggggagcagcccgaa
gagtgcttcactgaagcctgtgtgcagcggtgcccctgcctctatgtggacatctcccag
ggccgcgggaagaagtggtggaccctccgcagggcctgcttcaagattgtcgagcacaac
tggttcgagaccttcatcgtcttcatgattctgctcagcagtggggctctagccttcgag
gacatctacatcgagcagcggcgcgtcatccggaccatcctggagtacgccgacaaggtc
ttcacctacatcttcatcctggagatgctgctcaagtgggtggcgtacggcttcaaggtc
tacttcaccaatgcctggtgctggctcgacttcctcatcgtggatgtctccatcatcagc
ctggtagccaactggctgggctattcagagctgggagccatcaaatctctgcgcacgctg
cgggccctgcgtcccctaagggcgctgtctcgatttgagggcatgagggtggtggtgaac
gccctcttgggagccatcccctccatcatgaacgtgctgctggtctgcctcatcttctgg
ctcatcttcagtatcatgggcgtcaacttgtttgctggaaagttctactactgcatcaac
accaccacctcggagaggttcgacatctcggaggtcaacaacaagtcacagtgcgaaagc
ctcatgcacacgggccaggtccgctggctcaacgtcaaggtcaactacgacaatgtgggt
ctgggctacctctcgctcctgcaggtggccaccttcaagggttggatggatatcatgtac
gcggctgtggactcccgggagaaggaggagcagccgcagtatgaggtgaacctctacatg
tacctctacttcgtcatcttcatcatcttcggctccttcttcacactcaacctcttcatc
ggcgtcatcattgacaacttcaaccagcagaagaagaagtttggagggaaagacatcttc
atgacagaagaacagaagaaatactacaatgccatgaagaagctcggctccaagaagccc
cagaagccgatcccccggccccagaacaagatccagggcatggtgtacgactttgtgacg
aagcaggtgttcgacatcaccatcatgatcctcatctgtctcaacatggtcaccatgatg
gtggagacagacgaccagagcgagctcaagatagacatcctgtacaatatcaacatggtc
ttcatcatcatcttcaccggggagtgcgtgctcaagatgttcgcgctgcgccactactac
ttcaccatcggctggaacatcttcgacttcgtggtggtcatcttgtccatcgtgggcctc
gcgctctcagatctgatccagaaatacttcgtgtcgcccacgctgttccgtgtgatccgt
ctggcgcggattggacgtgtcctgcggctcatccgcggcgccaagggcatccggacgctg
ctcttcgccctcatgatgtcactgcccgccctcttcaacatcggcctcctcctcttcctc
gtcatgttcatctactccatctttggcatgtccaactttgcctacgtcaagaaagagtcg
ggcatcgatgacatgttcaacttcgagaccttcggcaacagcatcatctgtcttttcgag
atcaccacgtcagctggctgggatgggcttctgaaccccatcctcaacagcgggccccca
gactgcgaccccaccctggagaaccccggcaccagtgtcaagggtgactgtggcaatccg
tccatcggcatctgcttcttctgcagctacatcatcatctccttcctcatcgtggtcaac
atgtacatcgccatcatcctggagaacttcaacgtggccacggaggagagcagcgagccc
ctgtgtgaggatgacttcgagatgttttacgagacgtgggagaagtttgacccggacgcc
acacagttcatcgattacagccgcctctccgacttcgtggacaccctacaggagccgctg
aggatcgccaagcccaacaagatcaagctcatcaccctggacctacccatggtgccgggg
gacaaaatccactgcctggacatcctcttcgcgctcaccaaggaggtgctgggcgactcc
ggggagatggacgccctcaagcagaccatggaggagaagttcatggcggccaacccttcc
aaggtctcctacgagcccatcaccaccaccctcaagaggaagcaggaggaggtgtgcgcc
accaagatccagagggcctaccgccgccacctgctgcagcgctccgtgaagcaagcggcc
tacctgcaccgccacggccaggacgcccgcggcgcgcccgagagcaccggcctcatcgcc
agcgccatgagcaagatgtacggccccgaggacggcgagcacggcggccagagtcggggc
gaggccgggggctccacgggggccagcccccccgacaccgccgcgcccccctcccccgcc
cccccagcaggacacgcggtgcgcccaggggtcaaggagtctcttgtctag
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