Perognathus longimembris pacificus (Pacific pocket mouse): 125366407
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Entry
125366407 CDS
T08928
Symbol
Brca1
Name
(RefSeq) breast cancer type 1 susceptibility protein
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop01524
Platinum drug resistance
plop03440
Homologous recombination
plop03460
Fanconi anemia pathway
plop04120
Ubiquitin mediated proteolysis
plop04151
PI3K-Akt signaling pathway
plop05206
MicroRNAs in cancer
plop05224
Breast cancer
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125366407 (Brca1)
09124 Replication and repair
03440 Homologous recombination
125366407 (Brca1)
03460 Fanconi anemia pathway
125366407 (Brca1)
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
125366407 (Brca1)
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
125366407 (Brca1)
09162 Cancer: specific types
05224 Breast cancer
125366407 (Brca1)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
125366407 (Brca1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
plop01009
]
125366407 (Brca1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
plop04121
]
125366407 (Brca1)
03036 Chromosome and associated proteins [BR:
plop03036
]
125366407 (Brca1)
03400 DNA repair and recombination proteins [BR:
plop03400
]
125366407 (Brca1)
Enzymes [BR:
plop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125366407 (Brca1)
Protein phosphatases and associated proteins [BR:
plop01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
125366407 (Brca1)
Ubiquitin system [BR:
plop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
125366407 (Brca1)
Multi subunit type E3
BRCC complex
125366407 (Brca1)
Chromosome and associated proteins [BR:
plop03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
125366407 (Brca1)
DNA repair and recombination proteins [BR:
plop03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
125366407 (Brca1)
BRCA1-A complex
125366407 (Brca1)
BRCA1-B complex
125366407 (Brca1)
BRCA1-C complex
125366407 (Brca1)
BRCA complex
125366407 (Brca1)
FA (Fanconi anemia) pathway
Downstream FA components
125366407 (Brca1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT_assoc
BRCT
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_4
zf-RING_2
zf-C3HC4_3
RING_XB3-XBAT31
zf-RING_5
zf-RING_6
BRCT_2
zf-RING_10
zf-ANAPC11
zf-Nse
Arm_3
RTT107_BRCT_5
Prok-RING_4
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
125366407
NCBI-ProteinID:
XP_048223026
LinkDB
All DBs
Position
17:complement(39917036..39989951)
Genome browser
AA seq
1796 aa
AA seq
DB search
MDSSSARVEEVQHVLSAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSR
CPLCKNDITKRGLQENTRFSQLVEELLRIIHAFELDTGLQFASVNYNFSKKKNKSEHLEE
EISVIHSSGYRDRAKKFRQNESQNSSLETSLSGQLSKLGIVSSLKTKKQIRSQNKSVYIE
LGSDSSEETSCISNYCSVLDEELLQITPQGTSAEASLDSAKRASCEGNITNIEHQSSSKD
LNTIGKQTTERHPEKNWSVSNLHVEPCGTDIHASSLQHENSSLLLTKDRMDVEKAAFCHK
SKQPALARSQQSRWAECKETCHKRQTPSTDIKVDQNADPCCGCKECSEDPRNTQDVPWIT
LNSSIQKVNDWLTRSDDMLTSDVSGKSESNAEVAGTLEVPNEVYGYSSPSEKINLLATDS
HTYLDFKSCKTISSNMEDKIFGKTYRRRTSLPNLSHVPENLIIKTLPIEQKIQEQPLTNK
LKRKRRTTSCLHPEDFIKTADLALVQKSPEKINQETRQMDQNGQVMCLTKSGPENETKSA
YVQKEKNRNPEKLLREKSTFRTKAEPISNSINTMELELSVHSPKLPKKNRLRRKTSIRHL
HAPDVAFRTPSPPIHSELQMNSCTSSEEMKKKSSQTDMCGRTLQLLEDTQSATATKKSNK
PDEQLSKRCDNNVSSEPKLTNTTSVSTNWSSSNKLEESVGPSLEREEIEENLETIEVPNL
AKDPKDRVVNGERVTPSERSVDNTGISWIPESEYDTQDSISLLEINPLRSGETASNQRMT
QYDVVENPKQVLRSCSKNTKQDTGSFMDPLRQQDDHILESDIEMEESELDTQYLQNTFQD
SKRQSFALFSNSGKAEKECVSAHSVSVSKQSPNVILEYEQREKNQDKEESKIRLAQAVKA
TMDFPVVCQKNKPGDNAECSSSITKTSGLCPSSQLTDNELTTANKLAILQDLYLMPSISL
GRPSVKTKCKKSLLKHLFEKQSVSSEEGMESESIIQSTVGMFSLNNVEKAFKEASPGSIN
EVGSSTTGGSSSINEVASSVENIQEELDRSRGPELNAVLRLGLTQSETYKETLPVSNCKH
PEIKEQTENEGVVQAVGADFSPCLTSDNLEAGMRNDVSQIYSETPENLLHDDGIKENTSF
AEGAIEETSAVFSKSIQKREFNRSPSPLTPASLAQGLETDDDLPCFRHFLFSKVTNKPSQ
SIRHTIKCLSEETEENPVSLRNNLQVNSNEILVEASQETQCSDSTGSSEHNALIDLTINS
NSRDSFLMFSPKQMNQEVIVLSDRGLVSDDEEREPDLEEEERTDSNLGEAASGYDSETDI
SEVSSQNDILTSQQKHIMKDNLKKMQQEMAHLEAVLQQHKSQQISTSSTSLITNYCGPEQ
NVSGKAVLAAEKNNGLPVTQTRKTFSADEFQVSPDSSTSKNKELGVQRSSPSKSQLVGNS
GSVHCLSSRLQNRNCPSQKELVMIDLEEEQLEKSQPPDLMEQSYIPKQDLERTPGLQSGN
HLFCNEPKSEPPKNSTPEPAHACSLSSQLQAAQSATSSAAACGDRARGARESREEPELST
STEKVNKRMSMVVSGLIQKEFVLVQKFARKHHITLTSAVTEETTHVVMKTDAEFVCERTL
KYFLGIAGRKWVVSYFWVTQSIKEGKVLDEHDFEVRGDVINGRNHQGPKRARESGEKLFT
GLEICCYGPFTNMATDQLEWVLQLCGASVVKELSSLTVGTGSHLIVVIQPDAWTEDSGFQ
AIGQLCEASVVTREWVLDSVALYKRQDLSTYLITQIPHNEDGCQPQIETTGPQGCA
NT seq
5391 nt
NT seq
+upstream
nt +downstream
nt
atggattcatcttcagctcgagttgaagaagtacaacatgtccttagtgctatgcagaaa
atcttagagtgtccaatatgtctggaattaatcaaagaacctgtttccacaaagtgtgac
cacatattttgcaaattttgtatgctgaaacttctcaaccagaagaaagggccctctcgg
tgtcctttgtgtaagaatgatataaccaaaaggggcctacaagaaaatacaagatttagt
caacttgttgaagagttattgagaatcattcatgcttttgagcttgacacaggattacaa
tttgcaagtgtgaattataacttttcaaagaagaagaataaatctgaacatttagaggag
gagatttctgttatccatagttcgggctaccgagaccgtgccaaaaaatttcgacagaat
gaatctcaaaattcttcattggaaaccagtcttagtggccaactctctaaacttgggatt
gtgagctctctgaagacaaagaagcagatacggtctcaaaataaatccgtctacattgaa
ttgggatctgattcttctgaagaaacaagttgtatatcaaattattgcagtgtcctggat
gaagaattgttacaaattactcctcaaggaaccagtgctgaagccagtttggattctgca
aaaagagcttcctgtgaggggaacataacaaatattgaacatcaatccagtagtaaagat
ttgaacactattgggaaacagaccactgagagacatccagaaaagaattggagtgtttca
aacttgcatgtggagccatgtggcacagatattcatgccagctcattacagcatgagaac
agcagtttattactcactaaagacagaatggatgtagaaaaggctgcattctgtcataaa
agcaaacagcctgccttagcaaggagccagcagagcagatgggctgaatgtaaggaaaca
tgtcacaaaaggcagactcccagcacagacataaaggtagatcagaatgctgatccctgc
tgtgggtgtaaagaatgttctgaggatccaagaaatacccaagatgttccttggataaca
ctaaatagcagcattcagaaagttaatgactggcttaccagaagtgatgatatgctaact
tctgatgtcagtgggaagtctgaatcaaatgcggaagtagctggtacattagaagttcca
aatgaagtatatggatattctagtccttcagagaaaataaacttactggccactgattct
catacttatttagatttcaaaagctgtaaaacaatttcgagtaatatggaagataaaata
tttgggaaaacctatcggaggaggacaagcctccctaacttgagccatgtacctgaaaat
ctaataataaaaacacttcccatagaacaaaagatacaagagcaacctctcacaaataaa
ttaaagcgtaaaaggagaactacgtcatgcctgcatcctgaggattttattaagacagca
gatttggcacttgttcagaagagtcctgaaaagataaatcaggaaactcgtcaaatggac
cagaatggtcaggtgatgtgtcttactaagagtggtcctgagaatgaaacaaaaagtgcc
tatgttcagaaagagaaaaacaggaatccagaaaaattattgagagaaaagtctactttt
agaactaaagctgaaccaataagcaacagtataaacactatggaactagaattaagtgtc
cacagtccaaaactacctaagaaaaataggctgaggagaaagacctctataagacacctt
catgcacctgatgtagccttcagaactccaagcccacctattcatagtgaactacaaatg
aacagttgtaccagcagcgaagagatgaaaaaaaaatccagtcaaacagatatgtgtggc
agaacactccaactcctggaagacacacagtctgcaactgcaactaagaagagtaacaag
ccagatgaacaattaagtaagagatgtgacaataatgtttcctcagaaccgaagttaaca
aacacaactagtgtttctactaactggtcaagttctaataaacttgaagaatctgttggt
cctagccttgagagagaagaaatagaagagaacctagaaacaatagaagtgccaaatctt
gccaaagaccctaaggatcgagtggtaaatggagaaagggtaacgccatctgaaagatct
gtagacaatactggtatttcatggatacctgaatctgaatatgacacccaggacagtatc
tcattactggaaattaatccccttagaagtggggaaacagcatcaaaccaacgtatgacc
cagtatgacgtagttgaaaaccccaagcaagttctccgcagttgttctaaaaatactaaa
caggacacaggaagctttatggatccattgagacagcaagatgaccacattctggagagt
gatatagaaatggaagagagtgaacttgatactcagtacctgcagaatacattccaagat
tcaaaacgtcagtcatttgctctgttttcaaattcaggaaaggcagaaaaggaatgtgtc
tctgcccactctgtgtctgtaagtaagcaaagtccaaatgtcattcttgaatatgaacaa
agagaaaaaaatcaggacaaagaagagtctaaaatcaggcttgcacaagcagttaaggcc
actatggatttccctgtggtttgtcagaaaaataagccaggtgataatgctgaatgtagt
agtagcattacaaaaacctctgggctttgtccatcatctcagttaacagacaatgaactc
actactgccaataaacttgcaattttacaggacttatatcttatgccatcaatttctcta
ggcaggccatctgttaaaactaaatgtaagaaaagcctgttaaagcatttatttgagaaa
cagtcagtgtcatctgaagaaggaatggaaagtgagagcatcattcaaagcacagtgggc
atgtttagtctaaataatgtagaaaaggcttttaaagaagccagcccaggcagtattaat
gaagtaggctccagtactactggaggaagctccagtattaacgaagtagcttccagtgtt
gaaaacattcaagaggaactagacagaagcagagggcctgaactgaatgctgtgctacga
ttaggtcttacacaatctgaaacctataaggaaactcttcctgtaagtaattgtaagcat
cctgaaataaaagaacaaacagaaaatgaaggagtagttcaggctgttggtgcagatttt
tctccatgtctaacttcagataacctagaagcaggtatgagaaatgatgtctctcagatt
tattctgagacacctgagaatcttttacatgatgatggaataaaggaaaatactagcttt
gctgaaggtgccattgaggaaacatctgctgtgtttagcaaaagtatccagaaaagagag
ttcaaccggagtcctagccctttaactcctgcatctttggctcaaggtcttgaaacagat
gatgatcttccctgcttccggcacttcttatttagtaaagtaaccaataaaccatctcag
tctatcagacatacaataaagtgtctgtctgaggaaacagaggagaacccagtatcactg
aggaataacttacaagtcaacagtaatgagatcttagtggaagcttcccaggagacacag
tgctctgacagcacagggtcttcagagcacaatgcattgatagacctgactataaactcc
aactcccgagattccttcttgatgttttctcccaaacaaatgaaccaggaagttattgtt
ttgagtgacaggggattggtttcagatgatgaagaaagggaacctgacctggaagaagag
gagagaacagattcaaacttaggtgaagcagcatctggctatgacagtgaaacagacatc
tcagaagtatcctcacagaacgatattttaacatctcagcagaagcatattatgaaagat
aacctgaagaaaatgcagcaggaaatggcccatctagaagctgtactacagcagcacaag
agccagcaaatttccaccagctccacttccctcataaccaactattgtggccctgaacag
aacgtctcaggaaaagcagttttagctgcagagaaaaataatggacttcctgtaacccag
actcgaaagaccttttctgctgatgagttccaagtatctccagatagttccaccagtaaa
aataaagaactaggagtgcaaaggtcttccccttccaagtcccagttggtaggtaatagt
gggtctgtgcactgcctgtctagcaggcttcagaacagaaactgcccatctcaaaaggag
cttgtgatgattgatctggaggaggaacaactggagaagtctcagccacctgacctaatg
gagcagtcttatatacccaagcaggacctagagagaacccctggcctgcaatctggaaac
cacctcttctgtaatgagcctaaatctgaaccccctaaaaacagcactccagagccagct
catgcctgcagtttatcatcccaattgcaagctgcccagtctgccaccagttcagctgct
gcttgtggggacagggctaggggagcgagagagagcagagaagaaccagaattaagcact
tcaacagaaaaggtcaacaaaagaatgtctatggtggtttcaggcttgattcaaaaagaa
tttgtacttgtacagaagtttgccagaaaacaccacattactttaactagtgcagttacc
gaagagactactcatgtcgttatgaaaacagatgcggagtttgtctgtgaacgaacactg
aaatattttctgggaattgcaggaagaaaatgggtagttagctatttctgggtgacccag
tctattaaagaaggaaaggtgctggatgagcatgattttgaagtcagaggtgatgtgatc
aatggaagaaaccaccaaggaccaaagagagccagggaatcaggggagaagctcttcaca
ggcctagaaatctgttgctatgggccctttaccaacatggccacagatcaactggagtgg
gtactgcagctgtgtggggcctccgtagtaaaggagctttcatcactcaccgtgggcaca
ggctctcacctaattgtggtcatacagccagatgcctggacagaagacagtggcttccag
gccattgggcagttgtgtgaagcatctgtggtgacccgggagtgggtattggacagtgtg
gccctctacaagcgccaggatctgagcacttacctgataacgcaaatccctcacaatgaa
gatggatgtcagccacagatcgaaaccacaggtccccaaggatgtgcttaa
DBGET
integrated database retrieval system
