Planctomyces sp. SH-PL14: VT03_19120
Help
Entry
VT03_19120 CDS
T04354
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pls
Planctomyces sp. SH-PL14
Pathway
pls03030
DNA replication
pls03410
Base excision repair
pls03420
Nucleotide excision repair
pls03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pls00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VT03_19120 (ligA)
03410 Base excision repair
VT03_19120 (ligA)
03420 Nucleotide excision repair
VT03_19120 (ligA)
03430 Mismatch repair
VT03_19120 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pls03032
]
VT03_19120 (ligA)
03400 DNA repair and recombination proteins [BR:
pls03400
]
VT03_19120 (ligA)
Enzymes [BR:
pls01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
VT03_19120 (ligA)
DNA replication proteins [BR:
pls03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VT03_19120 (ligA)
DNA repair and recombination proteins [BR:
pls03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
VT03_19120 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VT03_19120 (ligA)
MMR (mismatch excision repair)
DNA ligase
VT03_19120 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VT03_19120 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
BRCT_2
Zn_ribbon_NUD
Zn_ribbon_Top1
Motif
Other DBs
NCBI-ProteinID:
AMV20018
UniProt:
A0A142WYX7
LinkDB
All DBs
Position
complement(4949762..4951801)
Genome browser
AA seq
679 aa
AA seq
DB search
MPPSAQQEISDLREQINRHNRLYYVEAKPEIGDLEFDRLLKRLEELEAAHPEFDDPDSPT
RKVGGAPIEGFRTVPHRLPMLSIDNMYDEEELDEFDARVRKVLGTAEEVEYAVEYKIDGV
ALSLIYEHGRLVQALTRGDGRQGDDITHNARTIGGVPLKLAGPHPPAVLEVRGEAYIANT
DFAHLRADQERRGVELYANSRNTTAGALKLLDPKLCAARKVRFLAHGLGYSEGVDYQTHL
EFLAGLNIFGIPATPAVEARTGMAATRELCHKRMEELPGLDFEVDGLVIKVNNYALRERL
GNTSKAPRWVCAYKWEKYEATTQVLSIDIQVGKTGTLTPVANLKGVLIAGTTVTRASLHN
KDELERLGIRVGDWVVVEKAGKIIPHVVRVEEHLRTGEEKEFPFPESCPECGAPVARDEG
GVYIRCQNPNCPAQLKEGIRFFASRQAMDIEGLGIKLVEQLVDKGFLSNFGDIYRLSARR
EDLLQLERMGEKSVDNLLAGIEASKTRPLFRLLTALNIRHIGITTARALADYFGSLDLIA
AQSAEQLATVDEIGPVIAKSLETFFQSDFGRRIVDDLRSVGLDFGQPIDRSAETAADEAA
LPLSGKTIVVTGTLVHFKRDEIKELIHRLGGKASGSVSKKTTFVVAGEEAGSKLDKAREL
GVQILTEAEFVELVGPQPS
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgcccccgtccgcacaacaggaaatctccgacctgcgggagcagatcaaccgtcacaac
cggctttactatgtcgaggcgaagccggagatcggcgatctggagttcgaccggcttctg
aagcgactcgaggagctcgaagcggcccatcccgagttcgacgatcccgacagtccgacc
cgcaaggtggggggagccccgatcgaggggttccggaccgtcccgcatcgcctgccgatg
ctctcgatcgacaatatgtatgacgaggaggagctggacgagttcgacgcccgcgtccgc
aaggtcctggggaccgccgaggaggtcgagtacgcggtcgaatacaagatcgacggggtc
gcgctctcgctgatctatgagcacggccggctggtccaggcgttgacgcggggggacggg
cggcagggggacgacatcacccacaacgcccggacgatcgggggggtcccgctgaaactg
gccggaccgcacccgccggcggtgctggaggtccgcggggaggcgtatatcgccaacacg
gacttcgcccatctccgggccgaccaggagcggcggggggtggagctctacgcgaactcc
cgcaatacgaccgccggggccctgaagctcctcgaccccaagctctgcgccgcccgcaag
gtccggttcctggcccacgggctgggctactccgaaggggtcgactaccagacccacctc
gagttcctggcggggctcaacatcttcgggatcccggcgacgccggcggtcgaggcccgc
accgggatggcggcgacccgcgagctgtgccacaagcggatggaggaactgccggggctc
gacttcgaggtcgacggcctcgtcatcaaggtcaacaactacgctctgcgggagcggctc
ggaaacacctcgaaggccccccgctgggtctgcgcctacaaatgggagaagtacgaggcg
acgacgcaggtcctctcgatcgacatccaggtcggcaagaccggaacgctcacgccggtg
gccaacctgaagggggtcctgatcgccgggacgaccgtgacccgggccagcctgcacaat
aaggacgagctcgaacggctcggaatccgcgtcggcgactgggtcgtcgtggaaaaggcg
gggaagatcatcccgcacgtcgtgcgggtcgaagagcacctccgcaccggggaggagaaa
gagttcccgtttccggagagctgcccggagtgcggcgcgccggtcgcccgggacgaaggc
ggggtctacatccgctgccagaacccgaactgccccgcgcagctcaaggaggggatccgg
ttcttcgcctcccggcaggcaatggacatcgaggggctggggatcaagctcgtcgaacag
cttgtcgacaaaggctttctgtccaacttcggcgacatctaccgtctctcggcccgccgg
gaggacctgctgcagctcgagcggatgggggagaagtcggtcgacaacctgctggcaggg
atcgaggcctcgaagacgcggccgctgttccggctgctgacggcgctcaacatccggcat
atcgggatcacgaccgcccgggccctggcggactacttcggctccctcgacctcatcgcc
gcgcagtcggcggagcagcttgcgacggtcgacgagatcgggccggtgatcgccaagtca
ctcgagacgttcttccagtcggacttcggccggcggatcgtcgacgacctccgcagcgtc
ggtctcgacttcggccagccgatcgaccgttccgccgagacagccgcggacgaggcggcg
ctgccgctctccgggaagacgatcgtcgtcaccgggacgctggtgcacttcaagcgggat
gagatcaaggagctgatccaccgtctgggggggaaggcgtccgggagcgtctccaagaag
acgacgttcgtcgtcgccggggaggaggcggggagcaagctggacaaggcccgcgaactg
ggggtccagatcctcaccgaagcggagttcgtcgagctcgtcgggccgcagccttcgtga
DBGET
integrated database retrieval system
