Pelodictyon luteolum: Plut_1699
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Entry
Plut_1699 CDS
T00291
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
plt
Pelodictyon luteolum
Pathway
plt03030
DNA replication
plt03410
Base excision repair
plt03420
Nucleotide excision repair
plt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
plt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Plut_1699
03410 Base excision repair
Plut_1699
03420 Nucleotide excision repair
Plut_1699
03430 Mismatch repair
Plut_1699
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plt03032
]
Plut_1699
03400 DNA repair and recombination proteins [BR:
plt03400
]
Plut_1699
Enzymes [BR:
plt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Plut_1699
DNA replication proteins [BR:
plt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Plut_1699
DNA repair and recombination proteins [BR:
plt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Plut_1699
NER (nucleotide excision repair)
GGR (global genome repair) factors
Plut_1699
MMR (mismatch excision repair)
DNA ligase
Plut_1699
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Plut_1699
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
DNA_ligase_ZBD
BRCT
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
ABB24553
UniProt:
Q3B278
LinkDB
All DBs
Position
complement(1905646..1907679)
Genome browser
AA seq
677 aa
AA seq
DB search
MVSMHREDAQRREAEELRREIERHNHLYYVEAKPEISDYDFDRLLLRLIELEREHPELVT
PDSPTGRVGGAVTREFPPVEHREPMLSLSNTYSIGEVEEFSARVGRLLEAEGIRDRDMVA
ELKFDGVAVSLLYRDGVLVRGATRGNGRRGDDITVNLRTVPTVPLRLQTLDTPFSLGEGR
EVEVRGEVFMRKEDFTALNDTRPEEDRFANPRNATAGTLKLQDSAEVAVRRLWFVAYYLD
GIQDPDTPHFHRLQLLETAGFFTGGHYRLCKGMQEIAAFIARWNEERWHLPYETDGVVLK
LNDVRQWKTLGATSKSPRWAIAYKYPAQQATTVLRDVVFQVGRLGTITPVAELEPVRLAG
STVSRSTLHNFDEMRRLGIMIGDRVVIEKSGEVIPKVIRVVTEARPVDARLVELPSRCPA
CSTPIVREEGEVGFYCPNEAGCPAQLKGRILHFASRNAMDIQNLGEALVEQLVAFGLVHD
PGDLYFLQEPQLRNLERMGPKSAQNVVRALDESRSQSYARLLFALGIRHVGQATARELAR
AFPSIEALEAASEEELADVADIGPVIARSIREWFEAPAVSALLEKLRDARLPLAAEDPKP
LINSNFEGLSVVFTGALLRHDRQSASELVLERGGKIVSTVSKKTGLVVAGREAGSKLEKA
LKLGLRVISEEEFEAML
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggtgagtatgcatcgagaggacgcacagcggagggaggccgaggagctcagacgggag
atagagcgccacaaccatttgtactacgtagaggcgaagccggagatctcggactatgat
ttcgaccgcctgctcctccgccttatagagctggagcgggagcatcctgagctcgtgacg
cccgacagcccgactgggcgggtcggtggtgccgtcacgagggagttccctccggtggag
caccgcgaaccgatgctcagcctttccaacacctactccatcggcgaggtggaggagttc
agtgcgcgtgtgggacgcctgcttgaggcggagggcatacgggaccgcgacatggtggcg
gaactgaagttcgacggcgttgcagtaagcctcctctaccgtgacggagtcctggtgcgt
ggggccacccgtggcaacggccggcgcggcgacgacatcaccgtgaacctccggaccgtt
ccgacggtgcctctcaggctccagaccctcgacactccgttttcccttggcgagggccgt
gaggtggaggtgcgcggggaggtgttcatgcggaaggaggatttcacggcgctgaacgat
acccgtcccgaagaggaccggttcgccaatccccggaacgccacggccggaaccctcaag
ctgcaggattcggctgaagttgcggtgcgccggctctggttcgtcgcctactacctcgac
gggatccaggatcccgacaccccccacttccatcgactacagctgcttgaaacagcgggc
ttcttcaccggcggccactaccggctctgcaagggtatgcaggaaatcgccgcattcatc
gcccgttggaacgaggagcgctggcaccttccctacgagaccgacggcgttgtattgaag
ctgaacgacgtgaggcagtggaagaccctcggtgcgacgagcaagagcccccgctgggca
atcgcctacaagtacccagcccagcaggccacgaccgtgcttcgtgacgtggtcttccag
gtgggccggctcggtaccatcacgccggttgcggaacttgagccggtacggcttgcgggc
tcgaccgtgtcgcgttctaccctgcacaacttcgacgagatgcggcgccttggcataatg
attggcgaccgggttgtcatcgagaagtccggcgaggtgatcccgaaggtgatccgtgtc
gtcactgaggcgcgtcccgtcgacgcccgtttggttgagctgccctctcgctgccctgcg
tgcagcacgccgatcgtccgggaggagggggaggtcggtttttactgcccgaatgaagcg
ggttgcccggcgcagctgaaaggccggatcctgcacttcgcatcccgcaacgccatggac
atccagaacctcggcgaggcgcttgtcgagcagctggttgcattcggcctcgtgcatgat
cctggcgacctgtacttcctgcaggaaccgcagctccggaaccttgagcgcatgggaccg
aaatctgcacagaatgtggtaagggcgctcgatgaaagccgcagccagagctacgcacgc
ctgcttttcgcactcggtatacgccacgtcggccaggctacggcacgtgagctcgcacgt
gcatttccctcaattgaagcgcttgaggccgcctccgaggaggaacttgccgatgtggcc
gacatcggcccggtgattgcccggagcatcagggagtggtttgaagcgcctgccgttagc
gcgctccttgaaaaactccgtgatgcccgccttccgcttgcagccgaagatccgaagccg
ctcataaacagcaatttcgaggggctcagtgtcgtctttaccggtgcgctcctgcgccac
gaccgccagagtgcatccgagctggtgctggagcggggtggaaagatcgtttctacggtc
agcaaaaagacggggctcgttgtggcgggcagagaggctggcagcaagctggaaaaggcc
ctcaagctgggactcagggtcatcagtgaggaagagttcgaagcaatgctgtga
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integrated database retrieval system
