Photorhabdus luminescens: CE143_01300
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Entry
CE143_01300 CDS
T08000
Name
(GenBank) DNA ligase B
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
plui
Photorhabdus luminescens
Pathway
plui03030
DNA replication
plui03410
Base excision repair
plui03420
Nucleotide excision repair
plui03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
plui00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CE143_01300
03410 Base excision repair
CE143_01300
03420 Nucleotide excision repair
CE143_01300
03430 Mismatch repair
CE143_01300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plui03032
]
CE143_01300
03400 DNA repair and recombination proteins [BR:
plui03400
]
CE143_01300
Enzymes [BR:
plui01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CE143_01300
DNA replication proteins [BR:
plui03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CE143_01300
DNA repair and recombination proteins [BR:
plui03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CE143_01300
NER (nucleotide excision repair)
GGR (global genome repair) factors
CE143_01300
MMR (mismatch excision repair)
DNA ligase
CE143_01300
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CE143_01300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_OB
DNA_ligase_aden
RNA_ligase
HHH
HHH_5
HHH_2
SAC3
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
UJD73757
LinkDB
All DBs
Position
293384..295141
Genome browser
AA seq
585 aa
AA seq
DB search
MLNLLILILFIVFSTPIVAAETLNIEKDCPAWSQEKLQRETKSLMQQMAQWDQLYRQKGI
SEIDDEVYDQLMSELIHWQLCLKQSPDSNFPVEVVADNKLVHPVAHTGLSKLKDEREINR
WLHGRLPVWLQPKIDGVAVTLVYQNGKLVSLISRGNGAEGVNWTAKSRQIPDIPQEIENA
PPYMVPPYMVLQGELFLHKDGHIQQYSGSDGARNRVAGLMMRKEHSPELKQVGVFIWSWP
DGPVDMESKLQKLASMGFPLALRYSHKIERPEQVQKLRMHYFEQSMPFATDGIVLKQEIE
PKGNQWRSGSNSWAVAWKHPLRHQVTQVREVSFTIGRTGKISVVLGLDKVKLDDRQVSRV
NIGSVRRWQQLDVLPGDQVTLTLAGHGIPKLAQVVWRIKERQNIQPPDKQRYHVLSCLTL
TAGCEQQFNARLKWLGESLQMTGVSSGSWAMLAEQKLVTDLTGWLALSVQQIAALPGIGD
KRAQAIYSQFSKAKNQPFSYWMKGIGVPYMDKLSDDVDHWRQLEQKLAGSQLKQQFTSGQ
LKKLSDFVNDTQIKTIAEKLSVAGIKGFDRENGAVVNPVGIAIAQ
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgcttaatttattgatattgattctgtttattgttttcagtacaccgatagttgcggct
gagacattgaatatagagaaagattgcccggcatggtcgcaggaaaaattacaacgtgaa
acaaaaagtctgatgcaacaaatggctcaatgggatcaactttatcgtcagaaagggatc
agcgagattgatgatgaagtttatgatcaattaatgtcggagctaattcattggcagctt
tgtttgaaacaatcacctgattcgaactttccggtagaagttgttgcggataataagctg
gttcatccggttgctcataccggattaagtaaactgaaagacgaacgggaaattaaccga
tggttgcacggcagattacctgtttggttacagccaaagattgatggcgtggcggtaaca
ctggtttatcagaacgggaaactggtttcattgatcagccggggcaatggtgccgaaggg
gtaaactggacagcaaaaagccgacagattcccgatattccccaagagatagaaaatgca
ccgccttatatggtaccgccttatatggtattacaaggggagctttttctgcataaggac
gggcatatacagcaatattctggcagtgatggcgctcgtaatcgtgttgccggtttaatg
atgcgtaaggagcattcgccggaattaaagcaagtcggtgtgtttatctggagctggccg
gatggtcctgttgatatggaaagtaaattacagaagttggcaagtatgggttttccatta
gcgctgcgctacagccataaaatagagaggccagaacaggtacagaaactacggatgcat
tattttgaacaatccatgccttttgccacagacggtatcgtgctgaaacaggaaattgaa
cctaaagggaatcaatggcggtctggatctaacagttgggctgtggcatggaaacaccct
ttacgccatcaggtaacacaagtcagggaagtgagttttactattggcagaacgggcaaa
atctcagttgtgcttgggctggataaggtgaaattggatgaccgacaagtcagccgagtc
aatattggctcagtccgtcgttggcaacagttggatgtgttgccgggggatcaggtgact
ctcacgctggccggtcatggtatcccgaaattagctcaagtggtgtggaggattaaagag
cgtcagaatattcagccgccagataagcagcgttatcatgtgctgagttgcctgacatta
acggcgggttgcgaacaacagtttaatgcgcgactgaaatggcttggtgaaagtttgcaa
atgacaggcgtcagtagcggtagctgggcaatgttggccgaacagaaattagtcactgat
ttaaccggttggttggcgctttcagttcaacaaattgcggccttaccgggaattggagat
aaacgagcacaggctatttattcacaattcagcaaggcaaaaaatcagcctttttcctat
tggatgaaagggattggagtgccttatatggataagttgtctgacgatgttgatcactgg
cggcaactggagcagaaattagccggatcacagttaaaacagcaattcactagcgggcaa
ttgaaaaagttgtctgattttgtcaatgacacgcagattaaaacgattgcagagaaactg
tcagtggctggtatcaaggggtttgatcgggaaaacggggctgtggttaaccccgtaggt
atagctatagctcagtga
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