Photorhabdus laumondii subsp. laumondii DSPV002N: A4R40_01395
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Entry
A4R40_01395 CDS
T05478
Name
(GenBank) DNA ligase B
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
plum
Photorhabdus laumondii subsp. laumondii DSPV002N
Pathway
plum03030
DNA replication
plum03410
Base excision repair
plum03420
Nucleotide excision repair
plum03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
plum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A4R40_01395
03410 Base excision repair
A4R40_01395
03420 Nucleotide excision repair
A4R40_01395
03430 Mismatch repair
A4R40_01395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plum03032
]
A4R40_01395
03400 DNA repair and recombination proteins [BR:
plum03400
]
A4R40_01395
Enzymes [BR:
plum01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A4R40_01395
DNA replication proteins [BR:
plum03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A4R40_01395
DNA repair and recombination proteins [BR:
plum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A4R40_01395
NER (nucleotide excision repair)
GGR (global genome repair) factors
A4R40_01395
MMR (mismatch excision repair)
DNA ligase
A4R40_01395
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A4R40_01395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_DNA_ligase
DNA_ligase_aden
RNA_ligase
HHH
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AWK40270
LinkDB
All DBs
Position
302777..304519
Genome browser
AA seq
580 aa
AA seq
DB search
MLNLLILILFIVFSSPIVAAEIFVSNTEKNCPEWSQDKLQRETNSLMQQMAHWDQLYRQK
GISEIDDEVYDQLMSELTHWQFCLKQAPHSDFPVEVFPDNKLVHPVAHTGLSKLKDKQEI
NRWLHGRLPVWLQPKIDGVAVTLVYQNGKLVSLISRGNGAEGVNWTAKSRYIPDIPQNIE
NAPPDLVLQGELFLHKEEHRQQLLGSDGARNRVAGLMMRKDHSSELKQIGLFIWSWPDGP
AEMESKLRKLADMGFPLALRYSHKIEEPEQVQKLRMHYFEQPMPFATDGIVLKQEIEPKG
NQWRSGSNSWAVAWKHPLRHQVTQVREVNFTIGRTGKISVVLGLDKVKLDDRQISRVNIG
SVRRWRQLDVLPGDQVTLTLAGHGIPKLAQVVWRIKERQDIQPPDKQHYHALSCLTLTVG
CEQQFNARLKWLGENLQMTGVSSGSWAMLTERKLVTDLTGWLALSAQQIAALPGIGDKRA
QAIYSQFSKAKNQPFSYWMKGIGVPYMDKLSDNVYHWQQLEQKLAAAQLKQQLTVGQLKK
LSDFVSDAQIKAIAEKLSVAGITGFDRENGVVVNPADMAQ
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgcttaatttattgatattaattctgttcattgttttcagttcaccgatagttgcggct
gaaatttttgtttcgaatacagaaaagaattgccccgaatggtcgcaggacaaattacaa
cgtgaaactaacagcttgatgcaacagatggcgcactgggatcagctctatcgtcagaaa
gggatcagcgagatcgatgatgaggtttatgatcaattaatgtcggagctgactcattgg
caattctgtctgaaacaagcaccccattcagattttcctgtggaagtttttcctgataat
aagcttgttcatccggttgctcataccggattaagtaaactgaaagacaagcaggaaatt
aaccgatggttgcacggtagattacctgtctggttacagccaaagattgatggtgtagcg
gtaacattggtttatcagaacgggaaactcgtttcattaatcagccggggcaatggtgcc
gaaggggtaaattggacagcaaaaagccgatatattcccgatattccgcagaatatagaa
aatgctccacctgatttggtattgcaaggagaactctttctgcataaagaggagcataga
cagcaattattggggagtgatggcgctcgtaatcgggttgcgggtttgatgatgcgtaag
gaccattcgtcagaattaaaacaaataggtttgtttatctggagctggccggatggccct
gcggagatggaaagtaaattgcgcaaactggcagatatggggtttccattggcgcttcgc
tacagtcataaaatagaggaaccagagcaggtgcagaaactgcggatgcactattttgaa
caacccatgccttttgctacagacggtatcgtgctgaaacaggaaattgaacctaaagga
aaccagtggcggtctggatctaacagttgggctgtggcatggaaacaccctttacgccat
caggttacacaagtcagggaagttaattttactattggcagaacgggcaaaatctcagtg
gttcttgggctggataaagtgaaactggatgatcggcagataagcagagtcaatattggt
tctgttcgtcgttggcggcagttggatgtattaccgggggatcaggtgacgctgacattg
gcaggccatggtatcccgaaattagctcaggtggtatggcggatcaaagagcgtcaggat
attcagccaccggataagcagcattatcatgcactaagttgtttgacgttaacggtgggt
tgtgaacaacaatttaatgcacgattgaaatggcttggtgaaaatctgcaaatgacaggt
gtcagtagcggtagttgggcaatgttgaccgaacggaagttagtcactgatttaaccggt
tggttagcgctttcagctcaacaaattgcggccttaccaggaatcggagataaacgggca
caggctatttattcgcaattcagcaaggcaaaaaatcagcctttttcctactggatgaaa
gggattggagtgccttatatggataagctgtctgataatgtttatcactggcagcaactg
gagcagaaattagccgcggcacaattaaaacaacagcttactgtcgggcagttgaaaaag
ttgtctgattttgtcagtgacgcgcagattaaagcgattgcagagaaactgtcagtggca
gggataacgggttttgaccgggaaaacggggtcgtagttaaccccgctgatatggctcag
tga
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