Photorhabdus laumondii subsp. laumondii DSPV002N: A4R40_06985
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Entry
A4R40_06985 CDS
T05478
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
plum
Photorhabdus laumondii subsp. laumondii DSPV002N
Pathway
plum03030
DNA replication
plum03410
Base excision repair
plum03420
Nucleotide excision repair
plum03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
plum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A4R40_06985 (ligA)
03410 Base excision repair
A4R40_06985 (ligA)
03420 Nucleotide excision repair
A4R40_06985 (ligA)
03430 Mismatch repair
A4R40_06985 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plum03032
]
A4R40_06985 (ligA)
03400 DNA repair and recombination proteins [BR:
plum03400
]
A4R40_06985 (ligA)
Enzymes [BR:
plum01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A4R40_06985 (ligA)
DNA replication proteins [BR:
plum03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A4R40_06985 (ligA)
DNA repair and recombination proteins [BR:
plum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A4R40_06985 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A4R40_06985 (ligA)
MMR (mismatch excision repair)
DNA ligase
A4R40_06985 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A4R40_06985 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
5_3_exonuc
HHH
RUBY_RBDX
DUF3248
DZR_2
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AWK41267
LinkDB
All DBs
Position
1677687..1679705
Genome browser
AA seq
672 aa
AA seq
DB search
MKSTAQQIEKLRTTLRHHEYLYHVMDAPEIPDAEYDRLMQELQDLEEQYPELITSDSPTQ
RIGAAPLAAFEQVRHEIPMLSLDNVFDEESYLAFDKRVRDRLKETQDLVVCCELKLDGLA
VSLLYENGELVRAATRGDGTTGENITSNIRTIGAIPLRLFGENIPARIEIRGEVFMPQKG
FEKLNEEARRTGAKVFANPRNAAAGSLRQLDPRITAKRPLAFFCYGVGILEGGELPASHY
ERLIQFKKWGLPVSDKVKVCTDSQQVIDFYHDIVNQRSALGFDIDGVVVKINSLELQEIL
GFVARAPRWATAFKFPAQEQMTIVRAVEFQVGRTGAITPVARLEPVQVSGVIVSNATLHN
ADEIERLGLRIGDTVIIRRAGDVIPQVVGVLEERRPQDSNVVVFPEHCPVCGADIERIEG
EAVARCTGGLVCGAQRKEALRHFVSRRAMDVDGMGEKIIDQLVDKEYVKTPADLFRLTAG
KLTGLDRMGPKSAQNVVDALEKAKKTTFARFLYALGIREVGEATAANLAAHFGELDKLRS
ADEEALKEVQDVGEVVAKHVVNFFIEPHNQTVIDDLIDDIGINWEPVVVTRAEKIDSPFS
GKTVVLTGSLHQLSRDEAKAKLVALGAKVTGSVSKKTDLVIAGEAAGSKLAKANELNIPV
IDEEEMIRLLGE
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcaactgctcaacaaatagaaaagctcagaacaacactgcgtcatcatgaatat
ctgtatcacgtcatggatgcaccagaaatccctgatgcagaatatgatcggttaatgcag
gaattgcaggatcttgaagaacaataccctgagttgattacatcggattcaccaacgcag
cggattggcgctgctcctctggcggcttttgaacaggtccgccatgaaattcctatgttg
tcattggataacgtatttgatgaagagagttatctggcgtttgataagcgggtgcgtgac
cgcctgaaagagacccaggatttagtggtgtgctgtgagctgaaactggatggtttggcg
gtcagcctgttgtatgaaaatggtgaattggtacgggctgcaactcgtggtgatggtaca
acaggggaaaatattacatcaaatatacggactatcggcgcaattccactgcgtctattc
ggcgaaaatattccagctcgtattgaaattcgcggtgaagttttcatgccgcaaaaaggg
tttgagaaactgaatgaggaagctcgccgcacgggtgcaaaagtatttgctaacccacgt
aatgcggcggctggctctttacgtcagctcgatccccgtattacggctaaacgtccattg
gctttcttctgttatggtgttggtatattggaggggggagagttacccgccagtcattac
gaacgattgatacagtttaagaaatggggattgccggtcagcgataaagttaaagtttgt
accgatagtcaacaggttattgatttttatcatgatattgtaaaccagcgttccgcattg
gggtttgatatcgatggtgttgttgtcaaaatcaattcgctggaattgcaggaaatattg
ggctttgttgcccgggcgccacgttgggccacagcattcaaatttcctgctcaggagcaa
atgacgattgttcgtgctgttgagtttcaggttggtcgtactggcgcaatcaccccggta
gcacgtctggagccagtacaggtctctggtgtcattgtcagtaatgcaacattgcacaat
gcggatgagattgaacgtttaggtttgcggattggcgatacggttattatccgccgtgct
ggtgatgtgattccacaagttgtcggtgttttggaagagagaaggccacaggacagtaat
gtagttgttttccctgaacattgcccggtatgtggggcagatattgaaaggattgaaggg
gaagctgtcgcgcgttgtacggggggattggtgtgtggtgctcagcgtaaagaagcgctt
aggcattttgtttcccgtcgggcgatggatgttgacggcatgggagaaaagattatcgat
cagctagtggataaagagtatgtcaaaaccccggcagatcttttcaggctgacggcaggt
aaattgaccgggcttgatcgcatggggccgaaatctgcccagaatgtagtagatgcgttg
gaaaaagcaaaaaaaaccacctttgcccgttttctttatgcattgggtatccgtgaagtt
ggggaagcgaccgctgctaatctggctgctcactttggcgaactggataaattacgttct
gctgatgaggaagcattgaaagaggttcaggatgttggcgaagtggtggcgaaacatgtt
gttaacttcttcattgaacctcataaccaaacagttattgacgatctgattgatgatatt
ggtatcaactgggaaccggtcgtcgtaacgagagctgagaagattgatagcccattttcg
ggtaaaacagttgtactgacaggctccttgcatcagttatcccgggatgaagccaaagct
aaacttgttgcacttggggcaaaggtgacgggcagcgtttctaagaaaacagatttagtg
attgcgggtgaagccgctggttcaaaattagctaaagcgaatgagttaaatattccggtt
attgatgaagaagaaatgatccgtttattgggtgaataa
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