Paenibacillus larvae: ERIC2_c02120
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Entry
ERIC2_c02120 CDS
T02963
Symbol
ligA
Name
(GenBank) DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
plv
Paenibacillus larvae
Pathway
plv03030
DNA replication
plv03410
Base excision repair
plv03420
Nucleotide excision repair
plv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
plv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ERIC2_c02120 (ligA)
03410 Base excision repair
ERIC2_c02120 (ligA)
03420 Nucleotide excision repair
ERIC2_c02120 (ligA)
03430 Mismatch repair
ERIC2_c02120 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plv03032
]
ERIC2_c02120 (ligA)
03400 DNA repair and recombination proteins [BR:
plv03400
]
ERIC2_c02120 (ligA)
Enzymes [BR:
plv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ERIC2_c02120 (ligA)
DNA replication proteins [BR:
plv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ERIC2_c02120 (ligA)
DNA repair and recombination proteins [BR:
plv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ERIC2_c02120 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ERIC2_c02120 (ligA)
MMR (mismatch excision repair)
DNA ligase
ERIC2_c02120 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ERIC2_c02120 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
DNA_ligase_ZBD
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AHD04087
UniProt:
V9W4M2
LinkDB
All DBs
Position
223051..225072
Genome browser
AA seq
673 aa
AA seq
DB search
MTDVISAMKILIEEINKHNYHYYTLDEPTITDQEYDALYDRLLKLEKESGTVLPNSPTLR
VGGDILKGFEPHRHRSRLWSLDKAQSIEVLKNWHNRVQKLVNDYNSKNPSTPLPEPSFAV
ELKFDGLTINLTYDQGNLVQASTRGNGVVGEGILAQVKTIKSVPLEIPYKEGLIEVQGEG
MMLLSVLDQYNQTAAEPLKNARNAAAGALRNLNPKVTAERRLTAFFYNVGFSDRKQFMNH
QEMIAFLKENNFKVNPYVKYFNTIDEVFEEMKKLEQERHDFDFLIDGAVIKVTDIRTREV
LGYTEKFPRWAIAYKFEAEEVTTVLEGVSWEVGRTGKITPVAKVEPVELAGVTVQNCTLN
NIGDIERKNLKHALGSLVYIRRSNDVIPEILGKVTEEIDGEEIKYPEHCPACGTELEQRG
AHLFCPNRLGCKPQLIGRITHFASRDAMDIETFSVMTAEQLYQQLDVRDPADLYDLTYDD
IIQLPRFGEKKANNLLDAIEKSKERDLSSFLFALGIPNTGKTTTKVLAEHFRSLDKVMDA
AVEELIALPDVGGIVADSIYTFFRDPIMIESIRRMKKAGVQAQMEAEEGKAEIDPGHPFY
GKTIVLTGTLSSMSRDEAAKKLESLGAKVTGSVSKKTDIVIAGENAGSKLAKAEQLGIRV
IDNEDELLHLLDT
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatgtcatttcggcaatgaaaatcctgatcgaagagatcaataaacataattac
cactattacaccttagatgagcccactataacggatcaggaatatgatgctctttacgat
cggcttttgaagctggagaaggaaagcggaacagtattgcccaattcgcctactctacgt
gtcggaggagatattctgaaaggctttgagccgcatcgtcatcgatctcgtctttggagt
ctggataaagcccaatctattgaggttttaaagaactggcataatcgggttcaaaaactt
gtgaacgactataacagcaaaaatccgtccactccccttccggaaccatcttttgctgtt
gaattaaagttcgatgggcttacgatcaatcttacttatgatcaggggaatctggtacag
gcttcgacccgcgggaacggggttgtaggggaaggaatattggctcaggttaagacaatc
aaatcggttcccttggaaattccttataaagagggactcattgaagtacaaggcgaaggc
atgatgctgctttctgtactggaccaatataatcagacggcagcagaaccattgaaaaat
gcccggaatgctgctgcaggggcattgcgcaatcttaatcctaaggtaacagcagaacga
aggctgactgcatttttctataatgtaggattttcggatagaaagcagttcatgaaccat
caggagatgattgcttttcttaaggaaaataattttaaggtaaatccttatgtgaaatat
ttcaatacaattgatgaagtctttgaagagatgaaaaagctggagcaagagcggcatgat
tttgattttctgattgatggtgccgttattaaagttacagatataaggactcgtgaagtt
cttgggtatacggagaaatttccacggtgggctatcgcatacaaatttgaagcggaggaa
gtaacgacggttctcgaaggagtatcatgggaagtgggccgtaccggaaagattacccct
gtagcgaaggttgagcctgtagagttggcgggagtaacggttcaaaactgtacgctgaac
aatatcggggatattgaacggaaaaatttgaagcatgcactgggcagtctggtttatatc
cgccgttccaatgacgtgattcccgaaattctcgggaaagtcacggaggagatcgatgga
gaagaaattaaataccctgaacattgcccggcctgtgggacagagttggaacagcgcggc
gcacacttattctgcccgaatcgtttaggctgtaagccgcaactgattgggagaattacc
cattttgcctcccgggatgcgatggatattgagacattcagtgtgatgaccgcagaacag
ctgtatcagcagcttgatgttagggatccggcggatctctacgatttaacttatgatgac
atcatccagcttcctcgttttggagagaaaaaggcgaacaatctgctggatgctatagaa
aaaagcaaagaacgggacttatcgtcgttcctgttcgccctgggaattccgaataccggg
aagacaacaacaaaagtccttgccgagcatttccgcagtctggataaagtcatggacgca
gctgttgaggaacttatcgcccttccggatgttggcgggattgtagcagacagtatctat
accttcttcagagaccctattatgatagagagcataagacgaatgaaaaaagcaggagtg
caggcacaaatggaagctgaggaagggaaagctgaaatcgatccgggacatcccttttac
ggaaaaacaattgtattgacggggacgttgtcttcaatgtcaagggatgaagcggccaaa
aagttggagagcctgggagccaaggtgacagggagcgtatccaaaaagacagatatcgtc
attgccggggaaaacgccggcagtaaactggctaaagcggaacagcttggcatcagggtt
atagataatgaagacgaacttctccatctgcttgatacttag
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