Paenibacillus lautus: D5F53_00875
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Entry
D5F53_00875 CDS
T05701
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
plw
Paenibacillus lautus
Pathway
plw03030
DNA replication
plw03410
Base excision repair
plw03420
Nucleotide excision repair
plw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
plw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D5F53_00875 (ligA)
03410 Base excision repair
D5F53_00875 (ligA)
03420 Nucleotide excision repair
D5F53_00875 (ligA)
03430 Mismatch repair
D5F53_00875 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plw03032
]
D5F53_00875 (ligA)
03400 DNA repair and recombination proteins [BR:
plw03400
]
D5F53_00875 (ligA)
Enzymes [BR:
plw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D5F53_00875 (ligA)
DNA replication proteins [BR:
plw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D5F53_00875 (ligA)
DNA repair and recombination proteins [BR:
plw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D5F53_00875 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D5F53_00875 (ligA)
MMR (mismatch excision repair)
DNA ligase
D5F53_00875 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D5F53_00875 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
HHH
PTCB-BRCT
Nlig-Ia
DNA_ligase_ZBD
DUF5347
Motif
Other DBs
NCBI-ProteinID:
AYB41937
UniProt:
A0A385THK8
LinkDB
All DBs
Position
194849..196861
Genome browser
AA seq
670 aa
AA seq
DB search
MDFKEKMEKLIAELNNYNYHYYTLDQPLVSDKEYDALYDQLVALEAETGVTLPDSPTQRV
GGEILKGFAPHRHLAPLWSLDKAQNIEQLRTWHDRVVRLVNDYNTKNPGNPLKAPCYALE
LKFDGLTLNLTYQDGKLVQASTRGNGTVGEGILAQVKTIKSVPMTIPYTEGTIEVQGEGI
MNLSVLEQYNQTAAEPLKNARNAAAGALRNLNPKVTAERKLNAYFYNVGYSDGITFADHK
EMMDFLRENRLKVNPYIFYFEQFDDVMEQLADIEKRRSELDYLIDGAVVKVTDFRIREAL
GYTDKFPRWAVAYKFEAEETTTVLQSVTWNVGRTGKITPLARVEPVELAGVTVQNCTLNN
IGDIERKNLKFALGSRVFIRRSNDVIPEILGKVTEEQDGEEILYPEQCPSCGFPLEQRGA
HLFCNNKTGCKPQIVARITHFASRDAMDIETFSDKTAIQLYDELGVREPADLYTLSFDSL
LKLERFGEKKAQNLLDAIEKSKERDLASFLFALGIPNTGKSTTKMLADHYRDLNRVMAAT
AEELVELPDVGGIVADSIAGYFADPFAQASIQKMLSLGVQAKAPEAPKPVSTDSYFSGKT
VVLTGTLHLLTREEATERLEALGAKVTGSVSKKTDLLIAGEKAGSKLAKAQQLGIDILED
EEEFVRLLNE
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggatttcaaggaaaagatggagaagctcattgcggagctgaacaattacaattaccat
tactatacgctggatcagccgcttgtaagcgacaaggagtatgacgccctgtacgaccag
ctggtagcgttggaggcagagaccggagtaacgctcccggattctccgacccagcgggtg
ggcggggagattctgaagggtttcgccccgcaccgccatttggctccgttatggagtctc
gataaagcccagaatatcgagcagctccgtacctggcatgatcgcgtggtcaggctggtc
aatgactataatacgaagaatcccggcaatcctctcaaggcgccttgttatgcactggag
ctgaagtttgacgggctgacgctgaatctgacctatcaggacggcaagctcgttcaagca
tcgacacgggggaacggaacggtaggcgaaggcattttggctcaggtgaagaccatcaag
tcggtgccaatgacgatcccgtatacggaaggcacgatcgaagtgcagggcgagggcatc
atgaacctgtccgtgctggaacaatacaatcaaaccgcggccgagccgctcaagaacgcg
cgtaatgctgctgcaggagcgcttcgcaatctgaatccgaaggtgacggccgagcgtaag
ctgaacgcgtacttctacaatgtcggctactcggatggaatcacttttgccgaccacaag
gaaatgatggatttcctgcgcgagaaccggctcaaggtcaatccgtacattttttatttc
gagcagtttgatgatgtgatggagcagctggccgatatcgaaaaacgccgttccgagctc
gattacctcattgacggggcggttgtgaaggtgaccgatttccgcatccgcgaggcgctc
ggatataccgacaagttcccgcgctgggcggtcgcttacaaattcgaagcggaagaaacc
acgaccgtgctgcaatcggtaacttggaatgtgggacggaccggaaaaatcacgccatta
gcgcgtgtagagcctgttgagcttgccggagttacggtgcaaaattgtacgctgaacaat
atcggggatattgagcgtaaaaacctcaagttcgcgctgggctcgcgggtattcattcgc
cgttcgaatgacgtcattcccgagattctcggcaaagtgacggaggagcaggatggcgaa
gagatcctgtatccggaacagtgtccatcctgcggatttccgctggaacagcgcggcgcc
cacctcttctgcaacaacaagacggggtgcaaaccgcaaatcgtggcccgaatcacgcat
tttgcctccagggacgccatggacattgaaacattcagcgataaaaccgcgatccagtta
tatgatgaactgggtgtaagagaaccggctgatctttatacgctgtcttttgacagtttg
ctgaagctggagcgcttcggcgagaaaaaagcacagaatctgctggatgccatcgagaag
agcaaggagcgggatcttgcatcgttcctctttgcactgggtatcccgaataccggcaaa
tccacaaccaaaatgctggccgatcactaccgtgatctgaaccgcgtgatggcagcgact
gcggaggaattggtcgagctgccggacgtgggcggcatcgtggccgacagcatcgcggga
tacttcgcggacccgtttgcccaagcgagcatccagaagatgctctcgctgggcgtccaa
gcgaaagcgccggaagcaccgaagccggtcagcacggattcctacttcagcggcaaaacg
gttgtgctgacaggcaccctccatctgctgacccgcgaagaggcaaccgaacgcttggaa
gcgctcggcgccaaagtcacaggcagcgtgtccaagaaaaccgacctcctcattgcaggc
gaaaaagccggcagcaagctggccaaagcccagcagctcggcatcgacatcctggaggat
gaagaagagttcgtgcggttgttgaacgaataa
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integrated database retrieval system
