Prochlorococcus marinus subsp. marinus CCMP1375: Pro_1841
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Entry
Pro_1841 CDS
T00137
Symbol
lig
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pma
Prochlorococcus marinus subsp. marinus CCMP1375
Pathway
pma03030
DNA replication
pma03410
Base excision repair
pma03420
Nucleotide excision repair
pma03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Pro_1841 (lig)
03410 Base excision repair
Pro_1841 (lig)
03420 Nucleotide excision repair
Pro_1841 (lig)
03430 Mismatch repair
Pro_1841 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pma03032
]
Pro_1841 (lig)
03400 DNA repair and recombination proteins [BR:
pma03400
]
Pro_1841 (lig)
Enzymes [BR:
pma01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Pro_1841 (lig)
DNA replication proteins [BR:
pma03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Pro_1841 (lig)
DNA repair and recombination proteins [BR:
pma03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Pro_1841 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Pro_1841 (lig)
MMR (mismatch excision repair)
DNA ligase
Pro_1841 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Pro_1841 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AAQ00885
UniProt:
Q7V9J2
LinkDB
All DBs
Position
1698178..1700235
Genome browser
AA seq
685 aa
AA seq
DB search
MAETNHSKRISELRSLLNKANHAYYILDSPLIEDAVFDRLYRELIELEKQYPSLVTPDSP
SQRLGNKPATKFESIKHRIPLQSLDNAFNFDELNYWHSRMQKHLKSHSAMVCELKIDGNA
LALSYVNGVLTRGATRGDGAEGEEITANVKTIVSIPLSLHLQNPPAWVEIRGEAFIPNKV
FISLNKERLKEEKQLFANPRNACSGTLRQLDSRIVASRHLDFFAYTIHLPDDWIPGETDP
KKPKGQWEALLWLKAAGFRVNPNAKLISQPDQVEKFCIDWEKRRHQLPYTTDGIVIKIDD
FKLQKTLGITQKAPRWAIALKYPAEEAPTQLNKLIFQTGRTGTVTPVAEFNPIPLGGTLV
SKATLHNANRLSELDIHEGDTIVIRKAGEIIPEVIRVIKELRPNNAKKLVLPEKCPECNS
KLLKETGEAATKCLNNDCPAILRGVLRHWVSKGAMNIDGFGTKLVEQLVKRKIIKSIAGI
YELKEKNLENLERMGTKSAEKLLIEINNSKKQPWHKQLYGLGILHIGEANAKAIAEVFPS
ISLLADAAIASPESISNIYGIGSEITESLHKWFNCSINQNLIKELKDLGIALERVNEEGA
IDNILMQEKLQFSGKTFVITGTMPSLSRANLEELIEREGGKVNSSVSSKTNYLVAGEKPG
NKLKKAKELGIKVINEQELMTLISN
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
gtggcagaaacgaatcattccaagcggatttccgagcttcgttctcttctgaacaaagct
aatcacgcctattacatacttgattcacctttgatagaagatgcagtttttgatcgtctt
tatagagaactcattgaacttgaaaaacaatatccgtctttagtgacacccgatagtcca
tcgcaacgattaggaaacaagccagcaacaaaatttgaaagcattaaacaccgaattccc
ttacaaagcctagataatgcttttaattttgatgaactcaattattggcattcaagaatg
caaaagcatcttaaaagtcattccgccatggtgtgtgaattaaaaatagacggcaatgct
ttagctcttagttatgtgaatggggtgctaacaagaggagctactagaggcgatggtgct
gaaggagaagaaattacagcaaatgtcaaaactatcgtttcaataccattatccctacat
ctgcaaaatccacctgcttgggttgaaattagaggagaagcatttattccaaataaagtt
tttatttctctcaacaaagaacgtctaaaagaagaaaaacaactttttgcaaaccctagg
aatgcctgctctggaacacttagacaattagattctcgaatagttgcatcaagacatcta
gatttttttgcctacacaattcatttgccagacgattggataccaggtgaaacagacccc
aaaaaaccaaaagggcaatgggaagcattgctatggctaaaagcagcaggttttagagtc
aatccaaatgccaaattaatttctcaaccagatcaagttgaaaagttctgcattgattgg
gaaaaacgtcgacaccagcttccttatacaactgatgggatagtcatcaaaatagatgac
ttcaaactacaaaaaactttaggaataacccaaaaagcacctaggtgggccatagccctg
aaatatcccgcagaggaagcacccacacaattaaataaattaatatttcaaacaggtaga
acgggaactgttacacccgttgctgaatttaacccaattcctctgggagggacattagta
agcaaagcaactttgcacaatgcaaatagattatctgaacttgacattcatgaaggagac
acaattgttatacgtaaagctggcgaaattattcctgaagttattcgagttattaaagaa
ttaaggcctaacaatgcaaaaaaattagttctacctgaaaaatgtccagaatgtaactca
aaactcttaaaagaaactggtgaggcagcaactaaatgtctaaataatgattgtcctgca
attcttcgaggagtgctccgtcattgggtcagcaagggtgctatgaacatagatggtttt
ggaacaaagcttgtagaacaattagttaagagaaagatcattaaatcgattgcaggaata
tatgaacttaaagaaaaaaatttagaaaatcttgaaagaatgggtacaaaatcagcagaa
aagcttttaattgaaattaataactcaaaaaaacaaccatggcacaaacaactttatggc
ttgggaattttacatataggcgaagctaatgcaaaagcaattgctgaagtgtttccaagc
atatctctactcgctgatgcagcgattgcatctcctgaatccatttcaaatatttatgga
attggaagtgaaatcacagaatctcttcataagtggtttaattgttcgataaatcaaaac
ttaataaaggaattaaaagacttaggtattgcactagaaagagttaacgaggaaggggca
atagataatatattgatgcaagaaaagcttcaattctctggcaaaacttttgttattaca
ggtacgatgccatccttaagcagagcaaatttagaagagctaattgaacgtgaaggtggc
aaagtaaattcatcagttagctcaaaaaccaattatctagtcgcaggagaaaaacctgga
aataagttaaaaaaagctaaagaacttgggataaaggtcattaatgagcaagaattaatg
acacttattagcaattaa
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