Pseudoalteromonas marina: CPA52_10625
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Entry
CPA52_10625 CDS
T06578
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pmaa
Pseudoalteromonas marina
Pathway
pmaa03030
DNA replication
pmaa03410
Base excision repair
pmaa03420
Nucleotide excision repair
pmaa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CPA52_10625 (ligA)
03410 Base excision repair
CPA52_10625 (ligA)
03420 Nucleotide excision repair
CPA52_10625 (ligA)
03430 Mismatch repair
CPA52_10625 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmaa03032
]
CPA52_10625 (ligA)
03400 DNA repair and recombination proteins [BR:
pmaa03400
]
CPA52_10625 (ligA)
Enzymes [BR:
pmaa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CPA52_10625 (ligA)
DNA replication proteins [BR:
pmaa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CPA52_10625 (ligA)
DNA repair and recombination proteins [BR:
pmaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CPA52_10625 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CPA52_10625 (ligA)
MMR (mismatch excision repair)
DNA ligase
CPA52_10625 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CPA52_10625 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
DZR_2
Motif
Other DBs
NCBI-ProteinID:
ATG58656
LinkDB
All DBs
Position
complement(2298536..2300554)
Genome browser
AA seq
672 aa
AA seq
DB search
MSSSISEQINHLRTLLEQHNYNYYVLDTPSIPDAEYDRLLRELSALETQNPEFLSANSPT
QKVGGAALSKFEQVAHQVPMLSLDNAFSEDEFTGFNRRIKERLMSTNELTFCCEPKLDGL
AVSIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGNYPKELEVRGEVFMDSAG
FEKLNNEAQKRGEKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADGSIPEDHF
QQLEKLTDWGLPLCPETKLVEGPQAALDYYDDILTRRSELKYEIDGVVIKVNKKALQERL
GFVARAPRWAIAYKFPAQEEVTQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHN
GDEIARLGVKVGDTVIIRRAGDVIPQITQVVLERRPTDARDIVFPSACPICDSHVEKVEG
EAVARCTGGLVCPAQRKQAIKHFASRKALDIDGLGDKIVDQLVDRELIKTPADLFILKQG
HFESLERMGPKSAKNLVTALNEAKATTLAKFLYSLGIREAGEATAQNLANHFLTLENIIS
ASVESLTQVSDVGDIVASHVRGFFDEEHNLAVVNALIEQGVHWPALSAPSEDEQPLAGLT
YVLTGTLNTLNRNDAKARLQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQDLGIDVLTE
DGLIELLKKHNG
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgtctagcagcattagtgagcaaattaatcatcttcgtaccctattagagcagcacaac
tataattattatgtgcttgatacccccagcattcccgatgctgaatacgataggctatta
cgcgaactcagtgcgcttgaaacacaaaaccctgaatttttatctgctaattcaccgact
caaaaagtaggtggtgcagcgcttagtaaatttgagcaagttgctcatcaagtgccaatg
ctatcgcttgataatgcgtttagcgaagatgaatttacgggctttaatcgcagaataaaa
gagcgcttaatgagcacaaatgagctcactttttgctgtgagccaaaacttgatgggtta
gcggtatctattatttatcgtgatggagtgttggtacaagctgcaacacggggtgatggc
tttacaggcgagaatattactcaaaatgtaaaaacaattcgtaacgtcccccttaagttg
cgtggcaactaccccaaagagcttgaagtgcgtggtgaagtatttatggacagcgctggg
tttgaaaagctaaacaatgaagcgcaaaagcgtggcgaaaaagtatttgtaaatccacgt
aatgcggcggcaggtagcctacgccagctagactctaaaattaccgcaaaacgcccactg
atgttttatgcatacagtactggtttggttgctgatggctcaatccctgaggatcacttt
cagcaattagaaaagttaactgattggggcttacccctttgtccagaaacaaagctggtg
gaagggccacaagctgcacttgattattatgatgatattttaacgcgtcgcagtgagctt
aaatatgaaattgacggcgtggtaataaaagttaataaaaaagccctacaagagcgttta
ggctttgtagcgcgtgcacctcgttgggctattgcctataaatttccggcgcaagaggaa
gtcactcaactccttgatgtagagtttcaagttggtcgtacaggtgcaattacgcctgtt
gctcgtttagaacctgtgtttgtaggcggtgtaacggtgtctaatgcaacgcttcacaat
ggtgatgaaattgctcggttaggcgttaaagtcggcgatacggtgattatacgccgtgct
ggcgatgtgattccgcagataacacaagttgtgcttgaacgcaggcccacagatgcaaga
gacattgtgtttccatcagcttgccctatttgtgactcccatgtagaaaaagtagaaggg
gaagctgtagcccgttgtactggtggcctagtatgccccgcgcagcgcaagcaagctata
aagcactttgcctcgcgtaaggcactagatatagatggtcttggcgataaaattgttgat
caattagtggaccgtgagcttataaaaactccggctgatttatttatattaaagcaaggt
cactttgaatcacttgaacgcatggggcctaaatcggctaaaaacttagttactgcttta
aatgaagcaaaagcgactacgcttgctaaatttttatattcattgggtattcgagaagcc
ggtgaggctacggcacagaatttagcgaatcactttttaacgctagagaatattattagt
gctagtgttgaaagcctcacacaagtaagcgatgtaggcgatattgtggcatcgcatgtc
cgaggcttttttgatgaagagcacaatttagcggtggtcaatgcgcttattgagcaaggt
gttcattggccagcactaagtgcaccgtcagaggatgagcaaccgctggcggggcttact
tatgtacttacaggtacgctcaatacgcttaaccgcaatgatgccaaagcgcgcttacaa
cagctaggtgcaaaggtgtcaggtagtgtatctgctaaaactgatgctttagtagcgggt
gaaaaagccggctctaaactcacaaaggctcaagatttggggatagacgtgctcacagag
gatggtttaatcgagctccttaaaaagcataacggctag
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