Pseudomonas marginalis: U0037_22980
Help
Entry
U0037_22980 CDS
T10241
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pmab Pseudomonas marginalis
Pathway
pmab03030
DNA replication
pmab03410
Base excision repair
pmab03420
Nucleotide excision repair
pmab03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
U0037_22980 (ligA)
03410 Base excision repair
U0037_22980 (ligA)
03420 Nucleotide excision repair
U0037_22980 (ligA)
03430 Mismatch repair
U0037_22980 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmab03032
]
U0037_22980 (ligA)
03400 DNA repair and recombination proteins [BR:
pmab03400
]
U0037_22980 (ligA)
Enzymes [BR:
pmab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
U0037_22980 (ligA)
DNA replication proteins [BR:
pmab03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
U0037_22980 (ligA)
DNA repair and recombination proteins [BR:
pmab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
U0037_22980 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
U0037_22980 (ligA)
MMR (mismatch excision repair)
DNA ligase
U0037_22980 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
U0037_22980 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
5_3_exonuc
Tla3_C
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
WQD70894
LinkDB
All DBs
Position
complement(5053376..5055733)
Genome browser
AA seq
785 aa
AA seq
DB search
MTAAHTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAEHPDLVTRDSPTQ
RVGSAALSAFTQVKHDIPMLSLGNAFDETTMLEFDRRVTEGLDLPVGDLFGGGAAVEYSC
EPKLDGLAVSLLYQDGELVRGATRGDGTTGEDISVNIRTVRNIPLKLHGSGWPATLEVRG
EVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVTTDIS
DTHIGNLQQLKKWGMPISHELKLAKGIQDCLDYYRDIGERRNSLPYEIDGVVFKVNSIAS
QRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNA
TLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVSVVPERRPENARAVQIPESCPVCGSHVE
RTQLVKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIDGLGDKTIEQLVD
EKLIGSPADLYTLKYEQIIDLEGFADISSKKLITAIENSKTPTLARFIYALGIPDVGEET
AKVLARSLASLERVQKALPEVLTYLPDVGLEVAHEIHSFFEDSHNQDVIGALLSPQACGL
QLQDQGELSAEFAASTTLGGLLDKLHVPSVGPGAAQKLADKFVTLEGVIKADWLDMRQAL
PEKQAKAVREFFDNADNANHALAIEQQLKDFGMHWDSEKKVVEGLPEAGHTWVLTGSLEL
MSRDVAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKASELGLKVLDEEAFVAFLAK
HNIPV
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgcccacacccgcatcctcgaactgcgcgctgaactggatcagcacaactac
cgttaccacgtccttgacgagccgagcattccggacgccgagtacgaccggctgttccac
gagctcaaggccctggaggccgagcacccggacctggtcacgcgtgattcaccgacgcag
cgggtcggcagtgcggcgttgtcggcgttcacccaggtcaagcacgacattccgatgctc
agcctcggcaatgccttcgatgaaaccactatgctcgaatttgatcgccgggtgaccgaa
gggctcgacctgccggtgggcgatctgtttggcggcggggcagcggtggagtacagctgc
gaaccgaagctcgatggcctggcggtcagcctgctgtatcaggacggcgagctggtacgc
ggcgccacccgtggcgacggcaccaccggcgaagacatcagcgtcaacatacgcaccgtg
cgcaatattccgttgaagctgcacggcagcggctggccggcgaccctggaagtgcggggt
gaagtgttcatgtccaaggccggtttcgaacggctcaatgcctcgcaactggaagtcggc
ggcaagaccttcgccaacccgcgtaacgccgctgccggtagcctgcgccagctggactcg
aagatcactgccagccgcccgttggaattctgctgctacggtgtgaccaccgacatcagt
gatacccatatcggcaacctgcaacaactgaagaagtggggcatgccgatcagccacgag
ctgaaactggccaagggtatccaggattgtctggattactaccgcgacatcggcgagcgg
cgtaacagcctgccgtatgaaatcgacggtgtcgtattcaaggtcaacagcatcgcctct
cagcgcgagttggggttccgcgcccgcgaaccgcgctgggccatcgcgcataaattcccg
gccatggaagaactgaccgaactgctcgacgtggaattccaggtcggtcgtaccggcgcc
gtcacgccggtcgcgcgacttaaaccagtcaaggtcgcgggtgtgaccgtgtccaacgcc
acgttgcacaacatggatgaagtcgcgcgcctgggcctgatgatcggcgacaccgtgatc
atccgccgcgccggtgatgtgatcccgcaggtcgtgtcggtcgtccccgagcgccgcccg
gaaaatgcccgcgcggtgcagatccccgaaagctgcccggtgtgtggctcccatgtggag
cgcacgcaactggtcaagcgcagcaagggcaaggaaaccgtcagcgaaggcgcggtgtac
cgttgcgtcggccgtctggcctgtggcgcccagcttaagcaggcgattatccatttcgtt
tcgcgccgcgccatggacatcgacggcctgggcgacaagaccatcgagcaactggtggat
gaaaagcttatcggctcgccggccgacctctacacgctcaagtacgagcagatcatcgac
ctggaaggctttgccgatatttccagcaaaaagctgatcaccgccatcgaaaacagcaag
accccgaccctggcgcggtttatctacgccttgggcattcccgacgtaggcgaggaaacc
gccaaggtgctggcgcgctccctggcgtctctggagcgcgtgcaaaaagccttgccggaa
gtgctgacgtacctgccggacgtgggcctggaagtggcgcacgagattcacagcttcttc
gaagacagccacaaccaggacgtgatcggcgcgctgctgtcgccgcaggcatgcggcctg
caattgcaagatcagggcgaactgagcgccgaattcgccgccagcaccaccttgggtggt
ttgctcgacaagctccacgtgcccagcgtcggccctggcgctgcgcagaagctggcggac
aagttcgttaccctggaaggcgtgatcaaggccgactggctggatatgcgtcaggcactg
cccgagaagcaggccaaggctgtgcgcgaattcttcgataacgcagacaacgccaaccac
gccctggccatcgagcagcagctcaaggattttggcatgcattgggacagcgagaagaag
gtagtcgaaggcttgcccgaggccgggcatacctgggtgctcaccggctcgctggagctg
atgagccgtgacgtggccaaggataaacttgaaagcctgggcgccaaggtggcgggttcg
gtctcggcgaaaacccactgcgtggtggcggggccgggtgccggttccaagctggccaag
gccagtgaattgggcctgaaggtgttggatgaagaagctttcgtcgccttcctcgccaaa
cacaacatccccgtctga
DBGET
integrated database retrieval system
