Paenibacillus macerans: LMZ02_01510
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Entry
LMZ02_01510 CDS
T09394
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pmae
Paenibacillus macerans
Pathway
pmae03030
DNA replication
pmae03410
Base excision repair
pmae03420
Nucleotide excision repair
pmae03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LMZ02_01510 (ligA)
03410 Base excision repair
LMZ02_01510 (ligA)
03420 Nucleotide excision repair
LMZ02_01510 (ligA)
03430 Mismatch repair
LMZ02_01510 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmae03032
]
LMZ02_01510 (ligA)
03400 DNA repair and recombination proteins [BR:
pmae03400
]
LMZ02_01510 (ligA)
Enzymes [BR:
pmae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LMZ02_01510 (ligA)
DNA replication proteins [BR:
pmae03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LMZ02_01510 (ligA)
DNA repair and recombination proteins [BR:
pmae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LMZ02_01510 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LMZ02_01510 (ligA)
MMR (mismatch excision repair)
DNA ligase
LMZ02_01510 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LMZ02_01510 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
DNA_ligase_ZBD
DZR_2
Motif
Other DBs
NCBI-ProteinID:
UMV48113
LinkDB
All DBs
Position
complement(298847..300868)
Genome browser
AA seq
673 aa
AA seq
DB search
MDVMQKMKQLVEQLNKYNYHYYTLDEPLISDKEYDQLYDELTALEAETGVTLPDSPTMRV
GGELLQGFKPHRHLSPLWSLDKAQNEEQLQNWNNRAIKLIADYNTKNPENPLPEPTYVVE
LKFDGLTLNLTYTDGNLVQAATRGNGVVGEGILAQVKTIKSVPLTIPYREGTIEVQGEGI
MNLSVLAKYNETAAEPLKNARNAAAGALRNLNPRVTAERKLSAFFYNVGYSDQVRFRDHR
EMMEFLKENRFKVNPFVTYHSSFDEVVRELERIVERRASLDYLIDGAVVKITDMRTREIL
GYTDKFPRWAVAFKFEAEETTTVLESVSWNVGRTGKITPLAKVEPVELAGVTVQNCTLNN
VGDIERKNLKFALGTRVFIRRSNDVIPEILGKVTDEQDGGEIVFPTVCPACGTSLEQRGA
HLFCNNRLGCKPQIVARITHFASRDAMDIETFSEKTAEQLHDELNVHEPADLYTLKFDDL
IKLDRFGEKKANNLLEAIEQSKGRDLASFLFALGIPNTGKSTTKVLADHYGSLSAVMSAT
VEDLITLPDIGGIVAESIVSFFADPFQQAGIQKMLDQGVAPKAPDKPAVPVTDSFFSGKT
VVLTGTLHQLGRDEATARLEALGAKVTGSVSKKTDLVIAGEKAGSKLAKAQELGIPVIED
EDEFIRLLNESNG
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggatgttatgcaaaaaatgaagcagctcgtagagcaattgaacaagtacaactatcat
tactacaccctggatgagccgttgatcagtgacaaggagtacgatcaactgtacgacgaa
ttgaccgctttggaggcggagacgggcgtgaccttgccggactcgccgacgatgcgggtg
ggcggcgagctgctgcagggattcaagcctcaccggcatttgtcgcctttatggagcctg
gataaggcccaaaacgaggagcaactgcaaaactggaacaaccgggcaatcaagctgatc
gcggattataacaccaaaaatcccgaaaatccgctcccagagccgacgtatgtcgtcgag
ctgaagttcgatggactgacgctgaacttgacttatacggacggcaacctggtgcaggcg
gcgacccgggggaacggcgttgtgggcgaaggcattttggcccaggtgaaaacgatcaag
tccgtgccgctgaccatcccgtaccgtgagggcacgatcgaagtgcagggcgaaggcatc
atgaatttgtccgtactggccaaatacaacgaaacggccgccgaaccgctcaaaaacgcc
cgcaacgccgcggccggcgccctgcgcaacctgaatccgcgcgtcacggcggagcggaag
ctgagcgcttttttctacaacgtggggtattccgatcaagtccggttccgggaccatcgc
gagatgatggagtttctcaaagagaaccgttttaaagtcaatccgttcgtgacctaccac
agcagcttcgatgaggtggtgcgcgagctggagcggatcgtggagcgccgcgcttcgctc
gattacttgatcgacggagccgtcgtcaaaattaccgatatgcgcacccgcgagattctc
ggctacacggataaattcccgcgctgggcggtggcgttcaaatttgaggcggaagaaacg
accacagtgttggagtccgtgtcctggaacgtcgggcgcaccggtaaaatcacgcccctg
gccaaggtcgagccggtggagttggccggcgtcaccgtgcagaactgcacgcttaacaac
gttggcgacatcgagcggaaaaacctgaagtttgcgcttggcacccgcgtcttcatccgc
cgttccaacgacgtcatcccggaaattctcggcaaagtgacggatgagcaggacggcggg
gagatcgtctttccgaccgtgtgcccggcatgcggcacgtcgctggagcagcgcggcgcc
catctgttctgcaacaaccggctgggctgcaaaccgcagatcgtcgcccgcattacgcat
ttcgcgtcgcgcgatgcgatggacatcgagacgttcagcgaaaaaaccgccgagcagctg
catgacgagctgaacgttcatgaaccggccgacctgtacacgctgaaattcgatgatctg
atcaagctcgaccgcttcggcgaaaagaaagccaacaacctgctggaggcgattgagcag
agcaaaggccgcgaccttgcttccttcctgtttgcgctgggcattccgaacaccggtaaa
tcgaccaccaaagtgcttgccgaccattacggcagtttgtccgcggtgatgtcggcaacg
gtggaggacttaatcaccctgccggacatcggcggcatcgtggccgaaagcatcgtctcg
tttttcgccgatccgttccagcaggcgggcattcagaagatgctggatcagggcgtcgca
ccgaaggcgccggacaaaccggcggtcccggtgacggattccttcttctccggcaaaacc
gtcgtcctgaccggtacgctgcaccagctcggccgcgatgaggcgaccgcccggctggag
gcgcttggcgccaaagtgaccggcagcgtgtcgaagaaaaccgacctcgtcatcgccggg
gagaaagccggcagcaagctggccaaagcccaggagctcggcatacccgtgatcgaagac
gaagatgaatttatccggctgttaaacgaaagcaacggatag
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