Paraphotobacterium marinum: CF386_05500
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Entry
CF386_05500 CDS
T05093
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pmai
Paraphotobacterium marinum
Pathway
pmai03030
DNA replication
pmai03410
Base excision repair
pmai03420
Nucleotide excision repair
pmai03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CF386_05500
03410 Base excision repair
CF386_05500
03420 Nucleotide excision repair
CF386_05500
03430 Mismatch repair
CF386_05500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmai03032
]
CF386_05500
03400 DNA repair and recombination proteins [BR:
pmai03400
]
CF386_05500
Enzymes [BR:
pmai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CF386_05500
DNA replication proteins [BR:
pmai03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CF386_05500
DNA repair and recombination proteins [BR:
pmai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CF386_05500
NER (nucleotide excision repair)
GGR (global genome repair) factors
CF386_05500
MMR (mismatch excision repair)
DNA ligase
CF386_05500
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CF386_05500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_OB
DNA_ligase_aden
BRCT
HHH_5
PTCB-BRCT
HHH_2
MazE_antitoxin
Motif
Other DBs
NCBI-ProteinID:
ASK78497
UniProt:
A0A220VDS7
LinkDB
All DBs
Position
large:1049215..1051152
Genome browser
AA seq
645 aa
AA seq
DB search
MALSKNQIKILKSSFDLFDIDQINSDLESLKSFEILSEEKQLYILKVLNFLYRGGHPACT
DQQYNQFFNFFKKKYPNNDFILTVEPEPIIGEKLVTLPQKMLSTDKAYSKEEIIKWIDRI
RKASVQYGLDENNIEFKVTAKLDGYAAFDDGNSLYTRGNGSKGRNISFVFDRGLSVFGDE
RGLGAGEIVINKHYFNEHLANYFDNTRNIQASIIAEKNLSQVIQKSIIDRAAIFYPFKAL
PSWRGTSTELIKNYDSITKNVLSDIPFETDGVVIEITNQGLKDFLGSTRHHHRWQIALKS
NDESSLVEVLKVIPQVSRNGKNTPVVIFNSIRLSGAEISKATAHNYSMVKKLGIGVGSEL
EIVRSGLVIPKIERVIKKSSPSIPNHCISCGSVLHWIDDNLFCLNHNGCRDQIEKTIIHF
FETLGNNDGLGPATISTFYDHGIRSIYDVYLLENDPEKLFAMGFKQKSALNIIDALKKSR
RIEIEDWRFLAAFGINRLGYAASERILELYDISDLYNLDENDLIKIDGFAKKTSQIVING
FNLIKEQFDDIYKLNFNLKSSKLTIDSESKFLHKNLVFTGKMEIGSREDLEKIAKSLGAK
VTKSVSSKTDFLILGSKVGQRKIDAAKTHNIKLLSEKEFMELTSN
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atggcactttcaaaaaatcaaatcaaaattctaaaatcatcgtttgatttattcgatata
gatcaaataaactctgacttagagagcttaaaatcgtttgaaattttaagtgaagaaaaa
caactttatattttaaaggtattaaactttttatataggggtggtcacccagcatgtact
gatcagcaatataatcaatttttcaatttttttaaaaaaaaatatccgaacaatgatttt
attttaactgtagaacctgagccgataattggcgagaagttagtaacattacctcaaaag
atgttatcaaccgataaggcttatagtaaagaagaaattataaagtggatagatcgcatc
agaaaagcatctgttcaatatggtctggatgaaaacaatattgaatttaaagttacagca
aaacttgatggctatgcagcatttgatgatggaaattcgctctatacaaggggtaatggt
tctaaaggacgaaatatatcttttgtttttgatagaggtttatcagttttcggagatgaa
cgaggcttaggagcgggcgaaattgtaattaataagcattattttaatgaacacttggca
aattattttgataacacaagaaatattcaggcttcaataatagcagaaaagaatttatct
caagttatacaaaagtctatcattgacagagctgctattttttacccttttaaagccttg
ccttcttggagaggaacttctacagaattaattaaaaattatgattctattactaaaaat
gttttaagtgacattccttttgaaactgatggtgttgttatagaaataaccaatcaagga
ctaaaagactttttgggttctacaagacatcaccatagatggcaaatagcactgaaatca
aatgatgaatcaagtttggttgaagtattgaaagttataccacaagtatcgagaaatggt
aaaaacaccccagtagtaatttttaattcaataagattatcaggagctgaaatatcaaag
gcaaccgcacacaactactctatggtaaaaaaacttggaatcggagtgggttcagaatta
gaaattgttcgtagcggattagttattccaaaaattgaaagagtaattaagaaatcaagc
ccatctatacctaatcattgtatttcatgtggttctgtccttcattggatcgatgataat
ttattttgtttaaatcataacgggtgtagagatcaaattgaaaaaacaattattcatttt
tttgaaactcttgggaataatgatgggttgggtcctgctacaatttcaaccttttatgat
catggtatccgttcgatatatgatgtttatttgttagaaaatgacccagaaaagttattt
gctatgggcttcaagcaaaaatctgcattaaatattattgacgctctgaagaaaagtaga
aggattgaaattgaagattggagatttctagctgcttttggtattaatcggcttggttat
gcggcatctgaacgcattcttgaattatacgatattagtgatctttataatttagatgaa
aatgacttgattaaaattgatggctttgcaaaaaaaactagtcagattgtaattaatggc
tttaatttaatcaaagaacaatttgacgatatttataaattaaattttaatctcaaaagt
tccaaattaactattgatagtgaatcaaaatttttacataagaacctggtttttactgga
aaaatggaaattggttcgagagaagatttagaaaaaattgctaaaagccttggcgcaaaa
gtaacgaagtctgttagttctaagacagactttttgatccttggaagtaaagtgggtcag
cgaaaaattgatgccgctaaaactcacaatattaaacttttaagtgaaaaagaatttatg
gaactaacttcaaactaa
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