Parus major (Great Tit): 107198731
Help
Entry
107198731 CDS
T04864
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
pmaj
Parus major (Great Tit)
Pathway
pmaj04510
Focal adhesion
pmaj04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107198731 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107198731 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pmaj00536
]
107198731 (COL2A1)
Glycosaminoglycan binding proteins [BR:
pmaj00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107198731 (COL2A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
107198731
NCBI-ProteinID:
XP_015471389
Ensembl:
ENSPMJG00000000506
LinkDB
All DBs
Position
Unknown
AA seq
1507 aa
AA seq
DB search
MPGHRPAPGGRRTEPAATGAVPGAAPRPGLLLLLLLCLAAAAAAQDRDLPEAGSCLQDGH
RYSDKDVWKPEPCRICVCDTGTVLCDEIICEELRDCPSPEIPFGECCPICPTEQPSGWHP
GPKGQKGEPGDIKDVVGPRGPPGPQGPAGEQGQRGDRGEKGEKGAPGPRGRDGEPGTPGN
PGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGSPGP
QGFQGNPGEPGEPGAAGPMGPRGPPGPPGKPGDDGETGKPGKSGERGPPGPQGARGFPGT
PGLPGVKGHRGYPGLDGAKGEAGAPGAKGESGSPGENGSPGPMGPRGLPGERGRPGPSGA
AGARGNDGLPGPAGPPGPVGPAGAPGFPGAPGSKGEAGPTGARGPEGAQGPRGESGTPGS
PGPAGAPGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGI
AGFKGEQGPKGETGPAGPQGAPGPAGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQ
DGLAGPKGAPGERGPAGLAGPKGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPTGA
PGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGA
AGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGESGKPGDQGVPGEAGAPGLVGPRGE
RGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGATGPAGPNGAQGPPGLQGMPGERGAAGI
AGPKGDRGDVGEKGPEGAPGKDGARGLTGPIGPPGPAGPNGEKGESGPPGPSGAAGARGA
PGERGEPGAPGPAGFAGPPGADGQPGAKGEQGEPGQKGDAGAPGPQGPSGAPGPQGPTGV
TGPKGARGAQGPPGATGFPGAAGRVGPPGPNGNPGPPGPPGSAGKDGPKGARGDAGPPGR
AGDPGLQGPAGPPGEKGEPGEDGPAGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGP
SGEPGKQGAPGSAGDRGPPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGAAGVKGDRGE
TGPVGAPGAPGAPGAPGPVGPTGKQGDRGETGAQGPMGPSGPAGARGMPGPQGPRGDKGE
AGEAGERGLKGHRGFTGLQGLPGPPGPSGDQGAAGPAGPSGPRGPPGPVGPSGKDGSNGM
PGPIGPPGPRGRSGEPGPAGPPGNPGPPGPPGPPGTGIDMSAFAGLGQPEKGPDPGRYMR
ADEAVPGLRPHDAEVDATLKALNNQIESIRSPEGSRKNPARTCRDIKLCHPDWKSGDYWI
DPNQGCTLDAIKVFCNMATGETCVYPSPGSIPRKNWWSSKAKEKKHVWFAETINGGFHFS
YGAEDLAPNTANIQMTFLRLLSTEGSQNVTYHCRNSVAYLDEESGSLRKALLIQGSNDVE
IRAEGNSRFTYSVLEDGCTKHTGKWGRTVIEYRSQKTSRLPIVDIAPMDIGGPEQEFGVD
LGPVCFL
NT seq
4524 nt
NT seq
+upstream
nt +downstream
nt
atgcccggacaccgcccggcccccggcggccgccgcaccgagcccgcagccaccggcgcg
gtccccggagccgccccccggccggggctcctgctcctcctactcctctgcctcgccgct
gccgccgccgcgcaggaccgagacctccccgaggctggcagctgcctgcaggacgggcac
cgctacagcgacaaggacgtgtggaagccggagccgtgccggatctgcgtgtgcgacacg
gggacagtgctgtgcgacgaaatcatctgcgaggagctgcgggactgccccagccccgag
atccccttcggagagtgctgccccatttgccccaccgagcagcccagtggttggcatcca
ggccccaagggacaaaaaggtgaacccggtgacatcaaagatgtcgtaggaccccgagga
cccccaggcccgcagggccccgcaggtgagcagggacagcgaggggaccgcggcgagaag
ggcgagaagggcgcccctggcccccggggcagggatggggaacccggaactccaggaaat
cccggcccccccgggccccccggacccccaggaccccccggcttgggggggaacttcgca
gctcagatggccggaggcttcgacgagaaggctggaggggctcagatgggtgtcatgcag
ggacccatgggccccatgggaccccgcggcccccccggcccctctggctcccccggtccc
caaggattccaaggcaaccccggcgagcccggcgagccaggcgctgctggtccgatgggt
ccccggggacctccgggacctcctggcaagcccggtgacgacggcgagacaggcaaaccc
gggaaatccggcgagcgcggcccccccggcccccagggcgctcgtggcttccccgggacc
cccggcctgcctggagtcaaaggccaccggggctaccccggcctggacggcgccaaggga
gaggcgggagcacccggagccaagggcgagtccggctccccgggcgagaacggctccccc
ggccccatgggtccccgcgggctgcccggagagcgaggccgtccgggcccctcgggcgct
gcgggcgctcgtggcaacgacggcctcccgggcccggccggaccccccggtcccgtcggc
cccgcaggagcccccggcttccccggcgcccccggctccaagggtgaagccggtcccacc
ggagcgcgaggacccgagggtgcccaagggccccgcggagaatccgggacccccggctcg
cccggccccgccggtgcccccgggaacccagggacggatggcatccccggagcaaaagga
tcggcgggcgctccaggcatcgccggcgctccaggattccccggcccccgcggcccaccc
ggaccccagggagccaccggccctctgggccccaagggacagacgggcgaacctggcatt
gcgggattcaaaggcgagcagggacccaaaggagagacgggccctgcaggaccccaaggt
gcccccggaccagccggggaggaagggaagagaggagcccgcggagaacccggagctgcc
ggacctttgggtccacctggagagaggggcgctcctggcaaccgtggcttcccagggcag
gatgggctggctggccccaagggggccccgggtgagcgtggccccgctggcctggccggc
cccaaaggagccaccggcgaccccggacgccctggagagcctggcctgcctggagccagg
ggtctcacgggccgccccggggatgctgggccccaaggcaaagttggccccacaggtgcc
cctggcgaggatggacgccctggaccccccggcccccagggggctcggggccagcctggc
gttatggggttccctggtcccaaaggtgccaatggtgagcctggaaaagctggtgaaaaa
ggacttcccggagcgccggggctgaggggacttcctggcaaggacggagagactggagct
gctggacccccgggacctgccggcccagcaggggagaggggagagcaaggagcccccggc
ccctccggcttccaggggctgccagggccaccaggtccccccggcgagagcggcaaaccc
ggagatcagggtgttcctggagaagctggagcccccgggcttgtgggtcccaggggcgag
cgcggcttccccggcgagcgcggttctcccggcgcccagggcctgcaggggcctcgcggc
ctccccggcacccctggcaccgatggacccaagggtgccactggccctgccggccccaac
ggagcccagggacccccgggactgcaggggatgcctggggagagaggagctgccggcatc
gctggtcccaagggggacaggggagacgtcggagagaagggacccgagggagcccccgga
aaggacggagctcgcggtctgaccggtcccatcggcccccctggccctgctggccccaac
ggcgagaagggcgagtctggcccccctggcccatctggagctgccggtgcccgcggtgcc
cctggagagcgcggagagcccggagcccccggccctgccggatttgctggacccccgggt
gctgatggccagcccggagccaaaggcgagcagggggagcctggccagaagggtgacgcc
ggagctcccgggcctcaaggtccttctggggctcctggaccgcagggtcccacaggtgtc
actggtcccaaaggagctcgaggcgctcagggacccccgggagccaccggattccccgga
gctgccggacgtgttggaccccctggcccaaacggtaaccccggcccccccgggcccccc
ggctccgcgggcaaggacggccccaagggcgcgcggggcgacgcgggacccccgggccga
gcaggggacccagggctgcaaggccctgccggcccccccggcgagaaaggcgagcccggc
gaggacggccctgcgggtccggacggtccccctggtccccaggggctggcaggacagcgc
ggcatcgtggggttgccggggcagcgcggtgagcgcggattcccagggctgcccgggccc
tcgggagagcctggaaaacagggagcacctggatctgccggtgaccggggaccccccggg
cccgtgggaccccccgggctgacggggccagccggagagcccggcagggagggaaatccc
ggctctgacggacccccaggcagggacggggcggccggggtgaagggtgatcgtggggag
accggccccgtgggtgctcccggtgctcctggagctcctggcgctcccggccccgtggga
cccactggaaaacagggagacagaggagagacgggtgctcagggtcccatgggtccctct
ggccccgctggcgctcggggaatgccgggtccccaggggccgcgcggtgacaaaggcgag
gcaggcgaggccggcgagcgtggcctgaaggggcaccggggcttcacagggctccagggg
ctgcccgggccccccggtccttctggagaccagggcgctgccgggccagcgggtccctct
gggcccaggggtccccctggccccgtgggcccctcgggcaaggacggctccaatgggatg
cccggacctatcggcccccctgggccccgcgggaggagcggcgagcccggcccggcgggt
ccccccgggaaccctggcccacctggcccgcccgggccccccggcaccggcattgacatg
tcagcgttcgcggggctggggcagcctgagaagggccccgaccccgggcgctacatgcgg
gcagatgaggcggtgccagggctgcggccgcacgatgccgaggtggacgccaccctcaag
gccctcaacaaccagatcgagagcatccgcagccccgagggctcccgcaagaacccggcc
aggacctgccgagacatcaaactctgccaccccgactggaagagcggcgattactggatc
gaccctaaccagggctgcaccctggacgccatcaaggtcttctgcaatatggccacgggg
gagacgtgtgtgtaccccagccccggcagcatccccaggaagaactggtggagcagcaaa
gccaaggagaagaagcacgtctggtttgccgagaccatcaatggtggcttccacttcagc
tacggcgctgaggacctggcccccaacacggccaacatccagatgaccttcctgaggctg
ctgtccaccgagggctcccagaacgtcacctaccactgccgcaacagcgtggcctacctg
gacgaggagtcgggcagcctgaggaaggcgcttctcatccagggctccaatgatgtcgag
atccgtgctgagggcaacagccggttcacctacagcgtgctggaggacggctgcacgaaa
cacaccgggaagtggggcaggactgtcatcgagtaccgctcacagaagacctcgcgcctg
cccatcgtggacattgcacctatggacattgggggacctgagcaggagtttggggtcgac
ctcggccccgtctgcttcttgtaa
DBGET
integrated database retrieval system
