Parus major (Great Tit): 107200111
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Entry
107200111 CDS
T04864
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
pmaj
Parus major (Great Tit)
Pathway
pmaj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107200111 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmaj03032
]
107200111 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
pmaj03400
]
107200111 (TOPBP1)
DNA replication proteins [BR:
pmaj03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
107200111 (TOPBP1)
DNA repair and recombination proteins [BR:
pmaj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
107200111 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
107200111
NCBI-ProteinID:
XP_015473621
Ensembl:
ENSPMJG00000010184
LinkDB
All DBs
Position
2:complement(43408927..43436200)
Genome browser
AA seq
1517 aa
AA seq
DB search
MRSSKEPFFVKFIKSSGSSEYFSKALESIKEFQSEEHLQILEEESVLNIKENDKSLYICD
PFRGAGFSHLKKLGCRIVGPQVVLYCMQSQRCVPRAEYPVYNMTMADVTVSCTSLEKDVR
EEVHKYVQMMGGCVYRDLNVSVTHLIAGEVGSKKYLVAASLKKPILLPSWVKTLWDKSQQ
GIMRYTDVNMEDYACPVFLGCTICVTGLSSSDRKEVQRLTTEHGGQYTGQLKMNECTHLI
VQEPKGQKYECAKKWNVHCVSVQWFSDSIKKGFCQDEAMYKVEAGSKPCNAPSTSTPTND
TIKPPNHTLSDVSHISNINLSGVNETSCTSAMNSRLDPLSDELENLDISSFQAPEDLLDG
CRIYLCGFSGRKLDKMRRLINCGGGVRFNQLNEDVTHVIVGENNNELKQFLDKTAHRPNI
VTAEWLLESFGKGCLCPVEHYIPLNYQLLENPILEQPGMKSIFPKKPGLLKKDTVNIIKH
QKATEDDFLSQYVNNYSTLDEVEKLTSRTFSDVTNSTAQGENQPPVCNGSLAESSALAEG
GLFFGKRFLLLGFGEEDESCIADIIKENAGEVLPPQSRTIADYAVVPLLGCTVKATVGDV
VTNTWLITCAEQQALLDLRSNPLFTPVLVMEGATPLEDCVLSFSQFTGAERDSLVYLAGL
LGARVQEFFVRKASAKKGMFASTHLVVREPNGSKYEAAKKWNLPAVTVAWLLQSARTGKR
ADESKFLVENAEAEDTESFITQLSRTPAPVKVPDLEQPTYLLEAGKKGAVTPLDINRFQS
KAFQAVISHHTGKTTPVAQGGPLQKESSLNLDTPSKFLSEDKFFKPSFDVKDALEALETP
RGPEQRTRKLSTPLSEVISRNLKLALASSTTHAAALTASPQLAAAQPEVEEEPKPLADAV
IYVSKKLNKRQRELNAIAASLGADYRWCFDETVTHFIYKGGQNDNNKEYKSVKERGIHIV
SEHWLLASARECKRLPESLFPHTYNPKMSLDISAVEDIRFSSSSKPLSAGKAAEESEIIP
VVEDDAEDDVTTDQIKEKVPVGEEQIVASESKGVLTQALEMRENFQRQLQELMSATSLVK
PQGQRRSLSRSSFDGSPATPDSARSVRNGRSRVLEALRQSRQALADTNTEPSQSEQIIWD
DPTAREERARLVSNLQWPNSPSQYLEQGQSNTSKNMDEIKGSVPDAEMADIAVPEAGDGH
VIESLKNPTCRDPEMPIKDNLIPTPQAPSIAFPLANPPVAPEPKEKVVPEDEKADEEIEK
LRKFQLSSLNPQERIDYCHLIEELGGTVLEKQYFDPSCTHIVVGHPLRNEKFLASMAAGK
WVLHRSYLEACRGAGSFVQEEDYEWGSKSVLNVLSGINVNQKKLALAAMRWRKKIHKGRQ
ETGIVEGAFSGWKVILNVDQTKEAGFKRLLQSGGAKVFSGHSASLFKEATHLFADFSKLK
PDDSRVNVAEAAAQGVNCLKPEYIADYLIQDPPPPMESYCLPEAVSYLQNNSDLGTGLSQ
KRKALGEMSRVKRSRIH
NT seq
4554 nt
NT seq
+upstream
nt +downstream
nt
atgagaagtagtaaggagccgttttttgtgaagttcataaagtcttccgggagttcggag
tatttttctaaagctcttgagtctataaaagaattccagtcagaagaacatctccagatc
cttgaagaagaatcagtactcaatataaaagaaaatgataaatcactttacatttgtgat
cctttcagaggtgcgggtttcagtcatctcaaaaagcttggctgtaggattgttggacca
caggtagttctgtactgcatgcagtcgcagcgatgtgtcccaagagccgagtatcctgtg
tacaacatgaccatggccgatgtcacggtgtcctgtaccagcctggagaaggatgtgagg
gaagaagttcataaatatgtgcaaatgatgggtggatgtgtatatagagacctcaatgtg
tcagtaactcaccttatagctggagaagttggcagcaagaaatacttggtagctgcttcc
ctgaagaaacctattttgcttccttcttgggttaagacattgtgggataagtctcagcaa
ggcataatgaggtatactgatgttaatatggaagactacgcttgtcctgtgtttctgggc
tgcacgatttgtgtcactggcttaagcagctctgacaggaaagaagtgcagcgcctcact
actgaacacggtgggcagtacacagggcagctcaagatgaatgaatgcactcacctcata
gtgcaagagccaaaaggtcagaagtatgaatgtgccaaaaagtggaatgtgcactgtgtg
tctgtgcagtggttttctgacagcatcaagaaaggcttctgtcaggatgaggcaatgtat
aaagtagaggctggatcaaaaccatgtaatgcacccagtacatcaacacctacgaatgac
accatcaagcctcctaatcataccctttcggatgtcagccacatttccaatatcaatttg
agtggtgttaatgaaacttcatgtacttcagctatgaacagcagactggatcctctttct
gatgagttggagaacttggacataagttcttttcaagcccctgaagatttgttagatggg
tgtcgaatctatctctgtggtttcagtggcaggaagttggacaagatgagaaggcttatt
aattgtggtggtggtgttcgatttaatcagcttaatgaagatgttactcatgtcattgtg
ggggaaaataataatgagctgaaacaatttttggacaagacagctcacaggcctaatata
gtgacagcagagtggttactggagtcatttggtaaaggttgtctttgtccagtggagcac
tatatccctctaaactaccagctgctagagaatccaattttagaacaacctggaatgaag
tcaatttttcccaaaaaacccggtctcttgaagaaagacactgtgaacattataaagcac
cagaaagctactgaagatgacttcctctctcaatatgtaaataactattctacactagat
gaagttgaaaaactaacatccagaaccttcagtgatgttactaactcgactgcccaagga
gagaatcagcctcctgtctgtaatgggtctttggcagagtcttctgcactggctgaagga
ggcttattttttgggaagagatttcttcttctgggttttggtgaagaggatgagtcctgc
attgcagatattataaaggagaatgctggggaagttctgccaccacagagcagaaccatt
gcagactatgctgtggtacctttattagggtgcactgtgaaggcaactgttggtgacgtc
gtcacaaatacatggctgataacatgtgcggaacagcaggcccttttagatctccgatcc
aatccacttttcacaccagtcctggtaatggaaggagctacccctctggaagattgtgtt
ctttcttttagccagttcacgggtgcagagagagactcccttgtttatctggcaggactc
ctgggagccagagtccaagaattctttgtgcggaaagccagtgcaaaaaaaggaatgttt
gccagtacccatcttgtggtaagagagccgaatggctccaagtatgaagctgcaaagaag
tggaatttgccagcagtcactgtagcttggcttttgcagtctgcaagaacaggaaagagg
gcagatgaaagcaaattcttggttgaaaatgcagaggctgaagatacggagagtttcatt
actcagcttagcaggacaccagcacctgttaaagttcctgatttagaacagcctacttat
ctccttgaagctggaaaaaaaggagctgtgaccccccttgatatcaacaggttccagagt
aaagctttccaagctgtaatctctcatcatactgggaagacaactcctgttgcacaaggg
ggcccactccagaaagaatcatctttaaatcttgacacaccatccaagtttctttccgaa
gacaagtttttcaagccttcctttgatgttaaggatgctctggaagctctggaaactcct
agaggtcctgaacaaagaaccaggaaactgagcacacctctctccgaagtcatcagcaga
aacttgaaactggcactggcaagcagcacaacacatgcagcagctcttactgccagccct
cagttggctgctgcacagccagaagtggaagaagagcccaagcctctagctgatgctgtt
atatatgttagtaaaaaacttaataagaggcaaagggagctgaatgcaatagcagcttct
cttggagcagactacagatggtgctttgatgaaacagtaacacacttcatctataaggga
ggacagaatgataacaataaggagtacaaatctgttaaagaacggggtatacatattgtt
tcagaacattggcttttagcgagtgcccgagaatgtaaacggcttcctgaatctctcttt
cctcacacttacaatcccaaaatgagcctggacatcagtgcagtggaagacatcaggttc
tcctcctccagtaaacctctttcagctggaaaagcagcagaggaaagtgagattattcca
gtggttgaagatgatgctgaagatgatgtaactactgaccaaataaaggaaaaagtccct
gtaggggaagaacaaattgtagcaagtgaatccaaaggagttttaacccaagcactagaa
atgagggagaacttccaaaggcagctgcaggagctcatgtctgccacatcactagtgaaa
ccacaaggacagagaagatccctttccaggagcagctttgatggttctccagccactcct
gatagcgcacggtctgtgcgaaatggccgcagtagggtcttggaagccctaaggcagtcc
cgccaggcactggcagatacaaacacagagccatcccagagtgagcagatcatttgggat
gatcctactgcgagggaagagagagcaagacttgtcagcaaccttcagtggcctaatagt
ccttcccagtaccttgagcaaggtcagagtaacaccagtaagaacatggatgagatcaaa
ggatctgttcctgatgcagagatggctgatatagctgttcctgaggctggggatggacat
gtgattgaaagtctaaagaatcccacatgtagagatcctgaaatgccaattaaggataac
ttgatccccacgccacaggcccccagcattgctttccccctggctaaccctcctgtggca
ccagagcccaaagaaaaggttgttcctgaagatgagaaggctgatgaagaaatagaaaaa
ctccgtaaatttcagctgtcttctcttaatcctcaagaaagaattgattactgccatctg
attgaggaattaggtggaacagtacttgagaaacagtactttgatccgagttgcacacac
attgttgtgggacatcctcttcggaatgaaaaattcttggcttcgatggcagctggaaag
tgggtgcttcatcgttcctacctggaggcgtgtagaggagctggcagctttgttcaggaa
gaagactatgagtggggaagtaaatctgtacttaatgttttgtctggaatcaatgtaaac
cagaagaaactagcactggcagccatgaggtggaggaaaaaaattcataaagggaggcaa
gaaacgggtattgttgagggagctttcagtggttggaaagtgatcctgaacgttgatcaa
actaaggaagcaggattcaagcgccttcttcagtcaggaggagcaaaagttttttctggc
cattctgcatctctctttaaagaagcaactcacctctttgctgacttcagtaagctgaag
ccagatgactccagggttaacgtggcagaggcggcagcccagggagtgaactgcctcaaa
cccgagtacatcgctgactacctcatccaggatccacctccccctatggagtcttactgc
ctgccagaagctgtgtcttaccttcagaataactcagatcttggaaccggattatcccag
aaaagaaaagcactgggagaaatgagcagagtcaagcgatccagaatacactaa
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integrated database retrieval system
