Parus major (Great Tit): 107201453
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Entry
107201453 CDS
T04864
Symbol
SCAF8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
pmaj
Parus major (Great Tit)
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmaj03021
]
107201453 (SCAF8)
03041 Spliceosome [BR:
pmaj03041
]
107201453 (SCAF8)
Transcription machinery [BR:
pmaj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107201453 (SCAF8)
Spliceosome [BR:
pmaj03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
107201453 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
107201453
NCBI-ProteinID:
XP_015476191
Ensembl:
ENSPMJG00000008939
LinkDB
All DBs
Position
3:complement(54189885..54346711)
Genome browser
AA seq
1359 aa
AA seq
DB search
MEAVKAFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKN
NVFKSEIIQPLLDMAAGIPPPVVTPVLPSTTAAMSNNTPGTPVTPVTPANVAQSLPDPWV
SQIANTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSLLQALDAGLVVQLQALTAQ
LTAAAAAANTLNPLEQSVSFNKKLMDRFDFGEESEQNEEPKKETPSSQLPLVPESVNNSL
FHQLAEQLQQQNLEHLRQQLLEQQQPQKASPEENQEGNFGSEHSASPSQGSSQQQFLEVE
ANVDDTMDIQQQDMDIDEGQDVAEEEIFEQEEKKSAVRSRSRTRSRSRSRSPRKRRSRSR
SGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTL
WVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAYRALQKLSSGSYKI
GSKIIKIAWALNKGVKTEYKQFWDVDLGVSYIPWEKVKLDDLEGFAEGGMIDQETVNTEW
ETARSSEAAKENTQTTQSATVDKSTVITTQTEAYTQPVTMLQIPVAPAVPAVSLVPPAFP
VTMSVPPPGYSPIPPPPFLRASFNPSQPPPGYMPPPVPPVVPPPVVPPPVVPPVVPTPLV
QPPLPIAQETMKDVPFTGLVLPVGTVTSNLATPTLSAGSVFNPLPINKPESDDKVSHLTD
LQISSSENSRSVQSDVSSSSGLVGGVQPPSVSSNSGHPGEGPPPTVSSSSGLAGGVQPPS
VSSSSGHVGGVQPPTVSSNSGLAGGMQLPAVSSSSSLAGGIQPTNASSSSGLMAGVPPPN
VSSSSGLLAGVHPPSVSSSPGLLTGMQPPNVSSSSGVLAGVQPPSVSSNSGLLIMPPPNV
STSSGLMGVPPPNISSNSGLLAMQHPAAVPNMPHLNISNQRMPGMPVIDIRPGLMPHSPG
PRFPLMQPGMPPQRTLPPPAILDPSLHPPPPRGPFPPGDIFNQTERPFGTPGRQNIDNIS
NPEKRLPLGGDNIQQEGDRDYRFPPVENRDNLNRPSPVDVRDSVGRPPVDPREGIGRPPV
DGREHFARPHIDMRENFGRPGIDNLGRREHFGFNSDKHWGQRGDYDEREHHAFPIYGGPK
GFHEDRERFRHVNYRFDSRSGGPSWNRGFEQDAHRDFDDRRRPWERQRDRDDRDFNFCRE
INGNRFGRDRMSNNWIPPPHPRVFEYFDGATSQRKVDNMPQVNGENTETESQPPTAQVQD
DPELYEKLTSSVEINKEKSDTEADIESEPVVESTETEGT
NT seq
4080 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgtgaaagcctttaacagcgagttgtactcgctaaatgattataagccaccc
atttctaaagctaaaatgacacagatcaccaaggcagcaatcaaggctataaagttctac
aagcatgttgttcagagtgttgagaaattcattcaaaagtgcaaaccagagtacaaggtt
cctggtctgtatgtcattgactccattgtgagacagtcccggcatcagtttggacaagaa
aaggatgtatttgcgccaagattcagcaataacatcatcagcactttccagaacttgtac
cgttgtcctggtgatgacaagagcaaaattgttagagtgcttaatttgtggcagaagaat
aatgttttcaagagtgaaattattcagcctctcttggatatggcagcaggaattcctcct
cccgttgtgacccctgtcttgcccagcactacagctgctatgagcaacaatacaccaggt
acacctgtgactccagttaccccagccaatgtggcacagagtttacctgatccttgggta
tctcagattgctaacacagacacccttgctgctgttgcacagattttacagagtcctcaa
ggccaacagcttcagcagttgatacagacactgcagatacagcagcagaaacctcagcct
tcgctacttcaagccctggatgccggtcttgtcgttcagttacaggccctcacagcacaa
ctcacagctgcagcagctgctgctaacacacttaatccactggaacagagtgtctctttt
aataagaagctgatggacaggtttgactttggggaagaatctgaacaaaatgaagagcct
aaaaaggaaactccctcttctcaattgccattagtaccagaatctgtgaacaactcactt
tttcaccaactagctgaacagctgcagcaacaaaatttagaacatctcagacaacagctt
ctggagcagcagcagcctcaaaaggcaagccctgaggagaatcaagaaggaaattttggt
tcagagcactctgcatcaccatcacaagggagtagtcaacagcagtttttagaagtagaa
gcaaatgtagatgatacaatggatattcaacaacaggacatggatatagatgaaggtcag
gatgttgctgaagaagagatttttgaacaagaagaaaagaaatcagctgttcgttcaaga
tcaagaactcgttcaagatctcgttcaaggtcaccaagaaaacgaaggtctagatctcgg
tctggttctcgtaagcggaagcacagaaagcgttcacgctcaagatcaagagaaaggaag
aggaagtcatctcggtcatactccagtgaaagaagggctagggaaagggaaaaagaacgt
cagaaaaagggattgcctcctatacggtcaaaaacgctaagcgtttgcagtactactctt
tgggtaggtcaagtagacaagaaggctactcagcaagatttaacaaacttgtttgaagaa
tttggacagatagagtcaattaatatgattcccccaagaggatgtgcttatgtctgtatg
gtacatagacaagatgcatatcgtgctcttcagaaacttagttctgggtcatataaaata
ggatctaaaattattaagattgcttgggctttgaataaaggtgtgaaaacagaatacaag
caattctgggatgtggatctgggggtttcctatattccatgggagaaagtgaaattggat
gatttggaaggctttgctgaaggtggcatgattgaccaggaaactgtaaatacagagtgg
gaaacagccagaagctcagaagctgctaaagaaaatactcaaacgacgcagagtgctaca
gttgataagagtaccgttattacaacacagacagaagcttacacacaaccagtcactatg
ctgcagattccagtagctccagctgtgcctgctgttagcttggttccacctgcgtttcct
gtcacaatgtctgtccctcctcctggttatagcccaattcctccaccacccttcttgaga
gcaagtttcaacccttcacagccacctccaggttatatgcctcctccagttccacctgtt
gtcccgccacctgttgtcccaccacctgttgtcccaccagttgttccaacacctttagta
cagcctccattaccaattgcacaagagacaatgaaggatgtcccttttactggccttgtt
ctaccagttggcacagttactagcaatctagctactccaacattatctgctggaagtgtt
tttaatcccctgccaatcaacaaacctgaatcagatgacaaagtatcacatcttacagac
cttcagatttcttccagtgaaaacagtagatctgtgcaaagtgatgtctcgagtagctct
ggacttgttggaggagtgcagccacccagtgtctcaagcaattctgggcatcctggagaa
gggccaccacccactgtctcaagtagctctggacttgcagggggagtacagccacccagc
gtttcaagcagctctggacatgtaggaggagtgcaaccaccaactgtttccagcaattct
ggtcttgcaggaggaatgcagctacctgctgtctccagtagctcttctcttgctggcggg
attcagccaactaatgcctcaagtagctctggacttatggctggagtgccaccaccaaat
gtctcaagtagctcagggcttctagctggagtccatccacccagtgtctcaagcagccct
ggccttctgacaggaatgcagccacccaatgtgtccagcagctcaggagttctggcagga
gtacagccacccagtgtttcaagcaactctgggcttctcataatgccaccacccaatgtc
tcaactagttctggacttatgggagtgccaccaccaaacatttcaagtaattctggactt
ctggcaatgcagcatccagctgcagttccaaacatgcctcatttaaatatcagtaatcaa
agaatgccaggaatgcctgttatagatatccgtccaggcctaatgccccattcccctgga
ccaaggtttccattaatgcagccaggaatgccaccacagcgtactcttcctcctcctgca
atccttgatccatctcttcacccaccaccacctcgtggtccttttcctccaggagatatt
tttaatcaaacagaaagaccttttggaacaccaggaagacaaaatattgataacatttct
aatccagagaaaaggctgccacttggaggtgataacattcaacaggagggagacagagat
tatcgctttcctccagtggaaaaccgagataatcttaacagaccatctccagtggatgtc
agagattctgttggacgaccaccggttgatccaagagagggtataggaaggcctccagta
gatggaagagaacactttgcaagaccacatatagacatgagagaaaattttggaagacca
ggtatagataaccttggccgaagagagcattttggtttcaattcagacaagcactgggga
cagagaggagattatgatgaaagagagcaccatgccttccctatttatggtggccctaaa
ggtttccatgaagacagagagaggtttcgacatgtaaactataggtttgatagtaggagt
ggtggtcccagttggaatagaggatttgaacaagatgctcacagagattttgatgaccgc
agaagaccctgggaaagacagagggatagggatgacagagattttaatttttgcagagaa
attaatggaaacaggtttggaagagacagaatgtcaaacaactggatcccgcctccacat
ccacgggtttttgaatattttgatggggccacttctcaacgcaaagttgataatatgccc
caggtaaatggtgaaaatacagagacagaaagtcagcctccaactgcacaggtgcaggat
gatccagaactttatgaaaaactgacatcttccgtcgagataaacaaagagaagagtgac
acagaagctgatatagagagtgaaccagtggtagaaagcacagaaactgaggggacataa
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