Parus major (Great Tit): 107201527
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Entry
107201527 CDS
T04864
Symbol
CPSF3
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
pmaj
Parus major (Great Tit)
Pathway
pmaj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107201527 (CPSF3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmaj03021
]
107201527 (CPSF3)
03019 Messenger RNA biogenesis [BR:
pmaj03019
]
107201527 (CPSF3)
Transcription machinery [BR:
pmaj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107201527 (CPSF3)
Messenger RNA biogenesis [BR:
pmaj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
107201527 (CPSF3)
U7-dependent histone pre-mRNA processing factors
107201527 (CPSF3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Dsh_C
DUF1611
Motif
Other DBs
NCBI-GeneID:
107201527
NCBI-ProteinID:
XP_015476376
Ensembl:
ENSPMJG00000012393
LinkDB
All DBs
Position
3:97979398..97998601
Genome browser
AA seq
758 aa
AA seq
DB search
MPMLFPFSLPFPMPMLFPFSLPFPFSLPFPIPLPFPIPLPFPRPMPFRVARGGAGAGRGG
RRRERGAMAAKRKAEALIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPG
LEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWL
LSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFM
IEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTV
HDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYV
NAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCT
DKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFI
RALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKV
MGSLADKKPEQGQRISGILVKRNFNYHILSPCDLSNYTDLAMSTVTQTQAIPYTGPFNLL
SYQLQKLTGDVEEIEIQQKPALKVFKNITVIQEPGMVVLEWVANPANDMYADTVTTVILE
VQSNPKIQKAAVNKISKKIDMDVYRKRMEIMLQDMFGEDCVSSKDDSVLCVTVDGKTANI
SLDTRTVDCEPGSEDDESLREMVELAAQRLYDALSPVY
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgccgatgctgttcccgttctcgctgccgttcccgatgccgatgctgttcccgttctcg
ctgccgttcccgttctcgctgccgttcccgatcccgctgccgttcccgatcccgctgccg
ttcccgcggccgatgccgttccgggtcgcgcggggcggcgcaggcgcggggcggggcgga
aggcggcgggagcgcggcgccatggcggccaagcgcaaagctgaggcgctgatcccggcc
gaggagagcgaccagctgcttatccggcccctaggtgctggccaagaagtaggaaggtca
tgcatcattctggagtttaaaggaagaaaaataatgcttgattgtggaatccatcctgga
ttggaaggaatggatgctcttccttacattgatttgatagatccagctgagattgatctc
ctcctcattagtcacttccatttagatcactgtggggctttgccatggtttttacagaaa
acaagttttaagggaaggacatttatgactcatgccacaaaagctatttacagatggctt
ctttcagactatgttaaagtcagtaacatctcagcggatgacatgctatacacagaaaca
gacctggaagaaagcatggacaagattgagaccatcaacttccatgaagtgaaagaggtg
gcaggaatcaaattctggtgctaccacgcaggccacgttctgggagcagccatgtttatg
attgaaatagctggtgtgaagctgttatatacaggtgatttctcaaggcaggaagacaga
cacctgatggcagctgagattcccaatatcaaaccagatattcttataattgaatccaca
tatggcactcacattcatgagaagagggaagagcgggaggcgcgattctgcaacaccgtt
cacgacatcgtgaacagagggggacgaggtctcatccctgtgtttgccctgggtcgagct
caagagttgctcctaatcttagatgaatactggcagaatcatcctgaactccatgatatc
cccatatactatgcttcttctttggcaaagaagtgtatggcagtttatcagacatacgtc
aatgccatgaatgacaaaatccgcaagcaaattaacatcaacaatccttttgttttcaag
catattagtaatctgaagagtatggatcactttgatgacattggccccagtgttgtgatg
gcttccccaggtatgatgcagagtggcttatccagagagctgtttgagagctggtgcaca
gataagagaaatggagtcattattgcagggtactgcgtagaaggaactcttgctaagcac
atcatgtctgaacctgaagagatcacaactatgtcagggcaaaaactccccctgaagatg
tctgtggattacatttctttctctgctcacacagattatcaacagactagtgaatttatc
cgggccctgaaacctccacatgtgattttagttcatggtgagcagaatgaaatggccaga
ttgaaagcagcattgatacgggagtatgaggataatgatgaagttcatatagaagttcat
aatcccaggaatactgaagctgtgacattaaacttcagaggagaaaaacttgccaaggtc
atgggatctttagcagataagaaaccagagcaaggacagagaatttctggaatcctagtt
aaaagaaattttaactatcacatcctttctccatgtgatctctccaattacacggacctg
gcgatgagcacagtgacccagacacaggccattccctacacaggccctttcaatctgctt
tcttaccagctgcagaaactcactggtgatgtagaagaaatagaaatccaacaaaaacca
gccctgaaggttttcaaaaatattactgtgatccaggagccaggcatggtagtccttgag
tgggtggcaaatcctgctaatgatatgtatgcagacactgtgacaacagtgatactggaa
gttcagtcaaatcccaaaatacagaaagctgcagtaaataagatttccaaaaagatagat
atggatgtatataggaagagaatggagatcatgcttcaggatatgtttggagaggactgt
gtgagttccaaagatgactcggtcctgtgcgtcacagtggatggaaagactgccaacatt
tccctggacactcggacggttgactgtgagccaggaagtgaagatgacgaatcccttcgt
gaaatggtggaactggcagcacagaggctttatgatgccctcagccctgtatactga
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