Parus major (Great Tit): 107201658
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Entry
107201658 CDS
T04864
Symbol
DDX1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
pmaj
Parus major (Great Tit)
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmaj03041
]
107201658 (DDX1)
03016 Transfer RNA biogenesis [BR:
pmaj03016
]
107201658 (DDX1)
Enzymes [BR:
pmaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107201658 (DDX1)
Spliceosome [BR:
pmaj03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
107201658 (DDX1)
Transfer RNA biogenesis [BR:
pmaj03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
107201658 (DDX1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
CMS1
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
107201658
NCBI-ProteinID:
XP_015476769
Ensembl:
ENSPMJG00000012469
LinkDB
All DBs
Position
3:100912430..100932290
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AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQMEGKKGKATIKTGGAVLNKWQMNPYDRGSAFAIGSDGLCCQSREIKEWH
GCRATRGVTKGKYYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
SYGEEFTMHDTIGCYLDTEKGQIKFSKNGKDLGLAFDIPPHIRNQALFAACVLKNAELKF
NFGEEDFKFPPKDGYVGLCKAPESSVVKSQHSGNAQVVQAQNLPNAPKALIVEPSRELAE
QTLNNVKQFKKYVDNPKLRELLIIGGVAARDQLSVLEQGVDIVVGTPGRLDDLVSTGKIN
LSQVRFLVLDEADGLLLQGYSDFINRIHSQIPQITSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVPVNPKADKLWERLGKNHIRTDEVHAKDNTRPGAN
TPEMWSEAIKILKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDRKGHQF
SCVCLHGDRKPQERKQNLERFKRGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAKEKEKVWYHVCSSRGKGCYNTRLKEEGGCTIWYNEMQLLG
EIEEHLNCTIAQVEPDIKVPVDDFDGKVTYGQKRALGGGLYKGHVDILAPTVQELAALEK
EAQTSFLHLGYLPNQLFRTF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgttctcggagatgggtgttatgcctgagatagctcaagcagtggaggaaatg
gactggcttctccctacagatatccaagcagaatccatcccattgatcttgggaggtggt
gatgtacttatggctgctgaaactgggagtggaaaaactggtgctttcagcattccagtt
atccagattgtttatgaaacactgaaagaccaaatggaaggcaagaaaggaaaagccact
attaaaactggaggggcagtgctcaataaatggcaaatgaacccctatgacagaggatca
gcttttgcaattggatcggatggtttgtgttgtcaaagcagagagattaaagaatggcat
ggatgcagagcaactagaggtgtgactaaagggaaatactactatgaagtttcctgtcat
gaccaaggcttgtgcagagttggttggtcaactatgcaggcttcattagatctgggcact
gataaatttggctttggctttggtggcactggtaagaaatctcacaacaagcaatttgac
agctatggtgaggaattcactatgcatgatacgattgggtgttatctagacacagaaaaa
ggacaaataaaattttccaaaaatgggaaggaccttggccttgcatttgatatcccacca
catataaggaaccaagcactttttgcagcttgtgtactgaagaatgccgaattgaaattc
aattttggagaagaagatttcaagtttccaccaaaagatggctatgttggtctttgcaag
gctcctgagagcagtgttgtaaaatcacagcactcaggaaatgcacaagtggttcaagca
cagaaccttccaaatgctccaaaagcattgattgtagaaccatcaagagagctggcagaa
caaactttgaacaatgtgaagcagttcaaaaaatacgttgataatcccaagttaagggaa
ctgctaattattggtggagttgctgcaagagatcaactctctgtactggaacaaggtgtg
gatattgttgttggaactcctggaaggctggatgacctggtctcaacagggaagattaat
ttatctcaagttagattcctggttctggacgaagctgatggccttctcctccaaggttat
tcagatttcataaacaggatccacagtcaaattcctcagataacctcagatggaaagaga
cttcaggtgattgtgtgctctgcaacactgcattcttttgatgtgaaaaaactatctgaa
aaaatcatgcattttcccacctgggttgatttgaaaggagaagattctgtccctgaaact
gtacaccatgtagttgtgcctgtaaatccaaaagctgataaactctgggaaaggctcggc
aagaatcatatcagaactgatgaagtacatgcaaaagacaatacaagacctggtgctaac
actccagaaatgtggtctgaagctattaaaattcttaaaggagaatacactgttcgggca
atcaaagagcacaagatggaccaagccattattttctgcaggactaaaatagactgtgat
aatatggagcagtacttcatccaacagggcggaggccctgataggaaggggcatcaattc
tcatgtgtctgcctgcatggtgatagaaaacctcaagaaagaaagcaaaatctggaaaga
tttaagagaggagatgtccgtttcttgatctgcacagatgttgctgctagaggaattgat
attcacggtgttccatatgttatcaacgtgacactccctgatgaaaaacagaactatgtt
catcgaatcgggagagtcggcagagctgagaggatgggtttggcaatctcccttgtggca
aaggagaaagaaaaggtttggtatcatgtatgcagtagtcgtggaaaaggatgctataac
accagactgaaggaagagggaggttgtaccatatggtacaatgagatgcagttgctgggg
gagattgaagaacacttgaactgcactattgcccaagttgaaccagatataaaagtaccg
gtggatgattttgatgggaaagttacatatgggcagaaaagagctctgggtggtggactc
tataaaggccatgtggatattctggcacctacagtacaagagttggctgcccttgaaaag
gaggctcagacatctttcttgcatcttggctatcttcctaaccagctgttcagaacattc
tga
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