Parus major (Great Tit): 107202847
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Entry
107202847 CDS
T04864
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
pmaj
Parus major (Great Tit)
Pathway
pmaj03030
DNA replication
pmaj03410
Base excision repair
pmaj03420
Nucleotide excision repair
pmaj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
107202847 (RFC1)
03410 Base excision repair
107202847 (RFC1)
03420 Nucleotide excision repair
107202847 (RFC1)
03430 Mismatch repair
107202847 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmaj03032
]
107202847 (RFC1)
03400 DNA repair and recombination proteins [BR:
pmaj03400
]
107202847 (RFC1)
DNA replication proteins [BR:
pmaj03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
107202847 (RFC1)
DNA repair and recombination proteins [BR:
pmaj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
107202847 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_14
AAA_22
Rad17
BRCT_2
AAA_5
AAA_30
AAA_16
RNA_helicase
RuvB_N
AAA_33
AAA_18
nSTAND3
AAA_17
AAA_7
TIP49
NTPase_1
AAA_19
Motif
Other DBs
NCBI-GeneID:
107202847
NCBI-ProteinID:
XP_015479279
Ensembl:
ENSPMJG00000015645
LinkDB
All DBs
Position
4:46491977..46525560
Genome browser
AA seq
1165 aa
AA seq
DB search
MQPSVECKDILNIDVHVFCAFQSAAHLCSQHKMDIRKFFGVVPPAKRQECETVKKSEKIK
NGEGPSNGKKREKETKVNNSPSEDDSKQKRMKKKRRIIYDSDSEEEVQSLKKSKKSPEKK
AATSKLGKVLKQDPVVYISETDEDDDFANKRISLKPKENGMSATGRPGTNTVKKEEVKPQ
AKSKPLSPVKQTPTSALDFFGTRSVQRSEKKLVASKRKEPSQSSDSTLDDEAIARQLQLE
EDSELERQLHEDEEFARTLAMLDETPQKKKARKDTEGEQTVLSINSSPNTTAAGYKQSER
VKATDSAGAAKNYSVKPQAKPEQLKGSRLSPQSSDGKKEVMAEKERGAQNSLSREKVASG
KEEKTTPKKEKVSPKKTESISPEDSEKKRNNYQAYRSFLNREGPKALGSKEIPQGAENCL
EGLTFVITGVLECIERDEAKSLIERYGGKVTGNVSKKTNYLVVGRDCGQSKCEKASTLGT
KVIDEDGLFDLIRTMPGKKSKYELAAETEAKKGESKPKKTPQKAEAGKRNFSPFKREADN
KKYKSTPEKGDTFRSVKKETTAVRKLTDFRHQTVKEKGTPKPMGNLVSEVNEDGTERLLW
VDKYKPVSLKAIIGQQGEQSCANKLLRWLRNWHKNTFEDGQAKPSKTGSKDDGTGFKAAL
LSGPPGVGKTTTAALVCKELGYSYVELNASDTRSKNSLKEVVAESLNNTSIKDFCSGASS
SVSGKHVLIMDEVDGMAGNEDRGGIQELIGLIRHTKIPIICMCNDRNHPKMRSLVHYCLD
LRFQRPRLEQIKGAMMSIAFKEGLKIPPPAMQEIILAANQDIRQVLHNLNMWCAKDKSLT
YDEAKTDASRAKKDIKLGPFDVVRKVFAAGEEAARMSLIDKSDLFFHDYSLAPLFVQENY
VHVKPAAAGGNLKKHLVLLSRAADSICDGDIVDRQIRSKQNWNLLPTQAIYASVLPGELM
RGYMSQFPVFPSWLGKFSSTGKHDRIIQELAMHMSLRTQTCKRTVNMEYLSYLRDALVQP
LKDFGADGVQQAITFMDSYCLMKEDVENIMEISTLGGKPSPFSKLDPKVKAAFTRAYNKE
VHLTPYSLSSVKASKRQSGSAATLDLSEDLNVEEIQSDEDEQDTVDSDAMIKQKKVKSSK
LPKREKNEETTKKEGKRKQKTRHLE
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgcaaccctcagtagagtgtaaagatattttaaatatagacgtacacgtgttctgtgct
ttccagagtgctgctcacctgtgcagtcagcataagatggatatccggaaattctttggt
gttgtacctcctgcaaagcgacaagagtgtgagactgtgaaaaagagtgaaaaaattaaa
aatggtgaaggaccctcaaatgggaagaaaagggaaaaggagactaaggtgaataattca
cccagtgaagatgattccaaacaaaagcggatgaaaaagaagagaagaataatctatgat
tcagattcagaagaggaggtgcagtcattgaaaaaatccaagaagtcacctgagaaaaaa
gcagctacttcaaaacttggtaaagttctaaagcaggatcctgttgtttatatttcagag
acagatgaggatgatgattttgccaataaaagaatttccctgaagccgaaggagaatggg
atgtcagcgactggtcgtccaggaacaaatactgtgaaaaaagaagaggtaaaaccacaa
gctaaaagcaaacccctgtctccagtgaaacagactcccacctctgcacttgatttcttt
gggacaaggagtgtccaacgctcagaaaagaaactggtggcaagtaaaaggaaagagcct
tcacagagcagtgacagcacattagatgatgaggccattgctaggcaactgcagcttgaa
gaagactcagagctggagagacagctgcatgaagatgaagaatttgctagaactctggcc
atgttggatgaaacaccacagaagaaaaaggctcggaaagatacagaaggagagcaaaca
gtactgagcatcaacagcagccctaatacaacagcagccggatataagcagtcagaaaga
gtgaaagcaacagactcagctggtgcagccaagaattactctgtaaagccacaagcgaaa
cctgaacagttgaaaggttctcgtttatccccacaatcatctgatggtaaaaaagaagtg
atggctgaaaaggaaagaggtgctcaaaattcactatcaagggaaaaagtggcttcgggg
aaagaagagaagacaacaccaaagaaggagaaagtttctcccaagaagactgagtctata
agtcctgaggactctgaaaagaagcgaaacaactaccaagcttaccgaagcttccttaat
cgtgagggtccaaaagcactgggttctaaagagatacctcagggagctgaaaactgcttg
gagggtctgacatttgtaattacgggtgttctggagtgtattgagagagatgaggccaag
tctctgattgaacgctacggaggaaaagtgactggcaatgtcagcaagaagacaaattac
ctggtggtggggcgagactgtggccagtccaaatgtgagaaggcatcaactttaggtaca
aaagttattgatgaagatggtctgtttgatcttattcgaactatgccaggtaaaaagtcc
aaatatgagctggcagctgaaacagaggcaaagaaaggggagtcaaaacccaaaaagaca
ccacagaaagctgaagctggaaaaaggaattttagccccttcaaaagggaagctgataat
aaaaaatacaagtctactcctgaaaaaggagataccttcagatctgtcaagaaagaaacc
actgctgttcgaaaacttacagactttagacatcagactgtaaaggagaaaggaaccccc
aaacctatgggaaacttggtttctgaggttaatgaagatggcacagagagattgctgtgg
gtagataaatataagcctgtatctcttaaggcaattattggacagcagggtgagcaaagc
tgtgccaataaacttctccgatggctcagaaattggcacaagaacacctttgaagatgga
caagcaaaacccagtaagactggaagcaaagatgatgggacaggctttaaagcagcatta
ctttctggtccacctggagttggtaaaactactacagctgctttggtttgtaaggaactg
gggtatagctacgtggaactgaatgccagcgacactcgcagcaagaacagtctaaaggaa
gtagttgctgaatcacttaacaacaccagcatcaaagacttctgttctggtgcatcttca
tcagttagcgggaaacatgtattgatcatggatgaagtggatggtatggcaggcaatgaa
gacagaggagggattcaggagttgataggtttgatccgacacacgaagatacccatcatt
tgtatgtgcaatgatcgcaaccatcctaaaatgcgctccttggtccactactgtttggat
cttcgttttcaaagacctcgtctagaacagatcaaaggtgccatgatgtctattgcattt
aaagaaggtttaaaaattcccccacctgctatgcaagagataatcctggcagcaaatcag
gacatcagacaggttttacataatcttaatatgtggtgtgcaaaagacaaatcactgact
tatgatgaggctaaaaccgatgccagcagagccaaaaaggacatcaaactgggtcctttc
gatgttgtccggaaggtttttgctgctggagaggaggctgctcgtatgtctcttatagac
aaatcagatcttttcttccatgattattcactagcacctctctttgtccaggagaattat
gtgcatgtgaaaccagctgctgctggaggtaatttaaaaaagcacttggtgctcttgagt
agagcagctgatagtatatgtgatggtgatatagtggacaggcagattcgtagcaagcag
aattggaatcttcttccaacacaggctatttatgcaagtgttctcccaggggagctgatg
aggggttacatgtcccagtttcctgtctttcccagctggctgggaaaattttcatctaca
ggcaaacatgatcgtatcattcaagaactggcaatgcacatgagtctcagaactcagaca
tgcaagaggacagtaaatatggaatatttgtcatatttgcgagatgcacttgtccagccc
ttgaaagactttggagcagatggtgtacaacaagctataacatttatggattcttactgc
ttgatgaaagaagatgttgaaaatatcatggaaataagcacgttgggaggcaaacccagt
cctttttcaaagctggatcccaaggtcaaagcagcttttactcgtgcctacaacaaagag
gtacatctgactccatattcacttagctctgtcaaggcatctaaaaggcagtcaggatct
gcagcgaccttagatctgagtgaagacttgaatgtggaagagatccaatctgatgaggat
gagcaggatactgttgacagtgatgcaatgattaagcaaaaaaaggtgaagtcttccaag
ctgccaaaaagagagaaaaatgaagaaacaacaaaaaaagaaggaaaaagaaaacagaaa
actagacatttagaataa
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integrated database retrieval system
