Parus major (Great Tit): 107203666
Help
Entry
107203666 CDS
T04864
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC107203666
Organism
pmaj
Parus major (Great Tit)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RVT_1
Gag_p24
RVT_thumb
rve
RNase_H
RVP
Gag_p24_C
Integrase_Zn
zf-CCHC
IN_DBD_C
DDE_Tnp_IS240
zf-CCHC_6
E7R
Motif
Other DBs
NCBI-GeneID:
107203666
NCBI-ProteinID:
XP_033370037
LinkDB
All DBs
Position
4A:11370497..11376504
Genome browser
AA seq
1758 aa
AA seq
DB search
MGRGGQRQLVPNVGPLRREETPGGVVFGLQRLLGGSYPGCSRPVFVRQRSQRKERQSLCA
RGTAPGALDISHGHCLDPTALVEKREMQKHPTQPSPVSSVSPVSPNPCSSSLVPKLGETC
GATCKTQGSEVGSSLPGSPSLPQNPCSGSPGQAARALTHSPTSPVNNSKFSPFQVPNPQF
DKVIDPQFLSQNPGSPTLPRSQYSPKPSPKSPHTLPDSQNGPRGTQDGGDRMVGPLPCAP
SSHNPFLPSKSNPFLPSSSFPSYPDPSHFPSDGPSSSGVCPQSVTFQNSTPSGRYSSLQP
SPSVGPPTPPLPAPGSHASPSSSHAPPTSSHAPPSGSHASGTGGDRPETWNPEQVVIPFA
APVSFRGRGGRYREWEPFSFQTKRELCKAQKEFGRRSEYFKGLLKATFSVNEMVPHDLKE
LFACLLSPADYRLWKQRWKKSLEAILPELLHSEETAVDADENPLSIDHLCGEGNWVKPEE
QARVLPRPVLIKITEATEKVFNILPGGEPLTNFSNIKQSPNEPFTIFVNRLQEQIERQVD
RPELQEQLILEMAKANCNDICKQVIFSLPLYPPPTLDALIDACKKKVPLVGTSRVPPPPH
VVRRPPTAAVTQHPAGHIVIPPARTTQCYRCGQLGHMARNCPVNHPHQGPMGDGSGERHW
MVVAVDSLEGDQLETGHDCKFIAIGDTKYTPPEIEISPITFPGGPENLILLVRCTHPPYF
LPKGQIIAQIIPVPEKIPVDDHAPGVYWAEVVGEDKPIIDCSVKQGAEFVNMKGLLDTGA
DVTIIPERRWPSHWELQPVAGKIQGIGGTQLARVSKSVVQITGPDEQLANLRPFVADFQP
ENPPGFSVAATVERPFQKLDWITDEVVWIDQWPLRKDKLRALNELMEEQLVKGNIVETTS
PWNSPVFVIRKPGKDKWRLLHDLRAINKIIVDMGPLQPGMPSPTMLPRNWNLAIIDIKDC
FFQIPLHPEDAPRFAFSVPTLNREAPVRRFHWWVLPQGMKNSPTICQWYVSSLLSPVRAK
MGEVIIHHYMDDVLVCAPHDDLLTQSLDLVVKVLTSGGFQLQEDKVQRMPPWRYLGLRIA
ERTIVPQKLAINSNPKTLADLHSLCGTLNWVRPWLGLTTEDLAPLFLLLKGEKELNSPRT
LTPEAREALEKVQDVLVERQAHRYEPSLPFEFIVLGRLPHLCGLIFQWDQGSRDPLLIIE
WVFLSHQLSKSITQPQELMAQLIRRARARLREMAGCDFSCIPGACSLSRDKASPDKLTKE
MFNQLLQENETLQIALDSYCGQISVHAPAHKFFNAKFDVIPREVRSRKPLKALTVFTDAS
GASHKSVVTWQDPRTQQWEADVKYVEGSPQVAELDAVVRAFERFPEPFNLVTDSAYVAGV
VAXELNMQLSKLFELLSKLIYAVSHRKQPFFIMHVRSHTELPGPVTEGNRIADSLATPVS
VAQLPDVFQQAKLSHQMFHQNVPGLVRQFHLRRDQARAIVATCPHCQSTAMTSLGSGVNP
RGLGSCEVWQMDMTHVPEFGRFRFVHLSIDTFSGAVFASAHTGEKAERVCKHLMQAFSVL
GVPKEIKTDNGPAYTSRKLEEFLQEWGVEHKRGIPHSPTGQAIVERAHQSLKRVRFHQKE
TVKGCTPQEWLCKALYTLNFLNCSDQDPNPPVTRHFQTAASYRLQHCPPVLVRDPETQKI
MGPFDLVTWGRGYACVSSPQGLRWIPQRWVKPWSLNIRAGRQMGSRMLVPSRPDEPPPTR
GGGGNNPEPFCYVDLPFS
NT seq
5277 nt
NT seq
+upstream
nt +downstream
nt
atgggccgcggcgggcagcgtcagctggtgcccaacgtggggcctcttcggcgagaggag
acccccggaggagtcgtttttggattacaaagacttttgggcggcagctaccccggttgc
agcaggccggtttttgtccggcagcgctcccagaggaaggagcgacaatctctctgcgca
cgagggaccgctcctggggctttggacatctcccacggtcactgtctggacccgacagct
ttagttgaaaaaagggaaatgcagaagcatccaacgcagccttccccagtttcttcagtt
tccccagtttccccaaacccctgctcctcatcccttgtccctaagttgggggagacctgc
ggagcaacctgtaaaacgcagggctccgaagtcggcagtagtctccctggctccccaagc
ctccctcagaacccttgctccggaagccctggccaagctgctagagcccttacccattcc
cctacttccccagttaataactccaagttttcccctttccaagttccaaatccccagttt
gataaagttattgacccccagtttctctcccagaaccctggatcccctacactccctcgt
tcccagtattcccctaaaccttcccctaaatctccccataccttacctgattcccaaaat
ggcccccgagggacacaagatggcggggaccgcatggtcggacccctcccttgtgctcct
tcttcccacaatccattcctcccctcaaagtccaaccccttcctccctagctcctccttc
ccttcctaccctgacccctcccactttccctcagatggtccctcctcctcgggggtgtgt
ccccaaagtgttaccttccaaaactccaccccttccggccgctactcctccctccaaccc
tccccctcagtcggtcctccaaccccgcctcttccggctcccggttcccacgcctcccct
tccagttcccatgctcctcctaccagttcccacgcccctccatctggttcccacgcttcg
ggaactggaggtgacaggcctgagacctggaacccggaacaggttgtgattccctttgcc
gcaccggtcagttttagaggaaggggggggagataccgagaatgggaacccttctccttc
cagacgaagagggagctgtgcaaggctcagaaggagttcggcaggagaagtgaatatttt
aagggcttattaaaggccaccttctccgtgaacgagatggtcccccacgacttgaaagaa
ttgtttgcctgcctcctttccccagctgactataggctgtggaaacagaggtggaagaaa
tcgttggaggccatccttcctgagctgctgcacagcgaggagaccgcggttgatgcggat
gaaaaccccctctcaattgatcacctgtgcggtgaagggaattgggtgaagccagaagaa
caggccagggttttaccccggcctgttttgattaaaattacggaggccactgaaaaggta
tttaacatcttgccggggggggaaccccttaccaacttttcaaacatcaaacaatccccc
aatgagccatttaccatttttgtgaaccggttgcaggaacagatagagagacaggttgat
agacctgagctgcaagagcagcttatcctcgaaatggcaaaagccaattgcaacgacatc
tgtaaacaagttatttttagcctgcctttgtatccaccgccgaccctggacgccctcatt
gatgcgtgcaagaagaaagtgccattagtggggacgtccagggtgccgccaccaccacac
gtggtcaggagaccaccaacggcagcagtgacccagcacccggcggggcacatcgttatt
ccgccggcaagaaccacgcaatgctatcgatgtggacagctgggccacatggcgaggaac
tgtcctgtcaaccaccctcaccaggggccgatgggggacggttcaggggaaaggcactgg
atggtggtagctgtggactcactggagggagatcagctggaaaccggacacgactgtaag
tttattgccatcggggacactaaatacacacccccagagattgagatttctccgattacc
ttcccgggtggtccggagaacctcattctcctggtgcgctgcactcacccaccatatttc
ttgccaaaagggcaaattattgcccagattattccagtgcctgaaaaaattccagtagac
gaccacgcaccaggcgtctactgggcagaagtggtgggtgaggataagcctatcattgat
tgcagcgtcaagcagggtgcggagtttgtcaacatgaagggtctgcttgacacgggggcg
gatgtgacgatcatccccgaaaggagatggccgtcacattgggagttgcaacctgtggcg
gggaaaatacagggtatagggggcacccaattggctcgagtttcaaagagcgtggtgcaa
attacggggccggatgagcaattagctaatttacgtccattcgtcgcagacttccagccc
gaaaaccccccgggattttcagtggcggccactgtggagcgccccttccagaagctggat
tggatcacggatgaagtggtctggattgatcagtggccgctcagaaaagataaattaagg
gcgctcaacgagctcatggaggagcaattagtaaaaggcaacatcgtagagacaacgagc
ccttggaattctccggtttttgtcattcgtaagccggggaaggacaagtggcgactcctc
cacgatcttcgtgcaataaataaaatcattgtagacatggggccccttcaaccagggatg
ccttccccaaccatgcttccccgaaattggaatttggcgataatcgacatcaaggattgc
ttctttcaaattcctctacaccctgaagatgccccacggtttgccttctcggtgcccacc
cttaaccgagaagccccagtgaggaggttccactggtgggtattgccccagggcatgaag
aactcaccgactatctgccagtggtatgtctcctcattgctgtctcccgtacgcgccaaa
atgggggaggtcatcatccatcactacatggatgatgtcctagtgtgtgccccccatgac
gatttacttacacaatctcttgacctagtggttaaagttttaacatcgggaggttttcaa
ctccaggaggataaagttcaaaggatgccaccctggagatatctgggtctgcggattgct
gagaggaccattgtgcctcaaaaattggccatcaacagcaatccgaaaactttggcggac
cttcactctctgtgcgggaccttgaactgggtcaggccttggctgggcctcactactgag
gacctagcccccctcttcttacttttgaagggggagaaggagctaaattctcccaggacc
ctgaccccagaagcgagggaagcactagagaaggtacaggatgtgctagtcgaaagacag
gcgcatcggtacgaaccgagcctgccctttgaatttattgtattggggagactgccacac
ctgtgtgggctcatcttccaatgggaccagggctccagggacccgctcttgatcatagag
tgggtcttcctgagtcaccagctgtccaaaagtatcacccagccacaggagctgatggct
cagctcatcaggagagctagggctagacttcgggagatggctgggtgtgacttttcgtgc
attccgggtgcctgtagcttgtctcgggacaaagcgtccccagataagctgacaaaggag
atgttcaatcagctgttacaggagaacgagaccctccagattgctctggatagttactgt
gggcaaatttcggtccacgcccctgcccataaattctttaacgcaaagtttgatgtaatt
ccaagagaagttcggagcagaaagcccctcaaagctctgactgtttttacagacgcatcc
ggagcctctcacaagtcagtagtgacttggcaagatcctcggactcagcagtgggaagca
gatgttaaatatgtggagggatctccacaagttgctgagttggatgcagtcgttagagcc
tttgagaggtttcctgaacctttcaatctggttacagattcggcctatgtagcaggggtg
gttgcgnnagagctgaacatgcagctctcaaagctgtttgagctgctttctaaactaatc
tatgctgtttcccacagaaagcagcctttcttcataatgcacgtgaggtcacacacggag
ctccctggcccggtaacagaggggaatagaatagcagattccctcgctacccccgtttca
gtggctcagctccctgacgtgtttcagcaagccaagctgagtcatcagatgttccaccag
aatgtgcctggactggtccgtcagttccacctgaggcgagaccaggccagagccattgtg
gccacatgcccacactgtcaatctaccgccatgacttccctaggatcgggggtcaaccct
cgaggcctggggagctgcgaggtgtggcagatggacatgacacacgtccctgaattcggc
aggttccgctttgtacacctttccattgacaccttctcgggtgctgtctttgcctctgcc
cacacaggagagaaagccgaacgtgtctgcaaacacctcatgcaagctttctctgtgttg
ggagtccccaaagaaataaaaacagataatggcccagcatacacctccaggaaactggag
gaattcctgcaggagtggggagtggaacataagagaggcatcccacactcccctacaggc
caagcgattgttgagcgagcccaccagtcgctcaagcgtgtccgttttcaccaaaaggag
actgtgaagggctgcacaccacaagaatggctgtgcaaggccctttacacactgaacttt
ctaaattgttcggatcaggatcccaaccctccagtgacccggcatttccagactgccgcc
agctaccgattgcaacattgccctccggtgctggtccgagaccctgagacccagaaaatc
atgggtccttttgacctggtgacctgggggcgtgggtacgcttgcgtatcctcgccccag
ggactaaggtggatcccacaaaggtgggtgaagccttggtccctaaacatccgagcaggc
cgccagatggggtcgaggatgctggtaccatcgcgtccggatgagccacccccaacccga
ggaggaggaggaaacaaccctgaacccttttgttatgtcgacttaccttttagttaa
DBGET
integrated database retrieval system
