Parus major (Great Tit): 107203714
Help
Entry
107203714 CDS
T04864
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
pmaj
Parus major (Great Tit)
Pathway
pmaj04382
Cornified envelope formation
pmaj04510
Focal adhesion
pmaj04512
ECM-receptor interaction
pmaj04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107203714 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107203714 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
107203714 (COL4A6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
107203714 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pmaj04147
]
107203714 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
pmaj00536
]
107203714 (COL4A6)
Exosome [BR:
pmaj04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
107203714 (COL4A6)
Glycosaminoglycan binding proteins [BR:
pmaj00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107203714 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
107203714
NCBI-ProteinID:
XP_015481510
LinkDB
All DBs
Position
4A:complement(11790919..11914478)
Genome browser
AA seq
1698 aa
AA seq
DB search
MGRTGALVLLLLWLGAELASAGGKKSYSGPCGGRDCSAGCKCFPEKGGRGRPGLIGLQGP
IGPPGFTGPEGLPGAKGERGAVGPPGPAGQKGDKGPMGVPGFQGINGIPGHPGQSGPRGL
PGLDGCNGTVGSRGISGPDGFPGLPGLSGRPGPKGLKGEPVFAQGSLKGMKGENGLPGLD
GVPGPKGIPGPIGPAGPIGLQGLQGPVGPPGPPGPKGNMGLGFQGEKGEKGDVGMPGPPG
PPPSTGILEFMGFPKGKQGDRGEPGPQGFPGDQGLPGTPGFGGVGEKGEKGEKGVPGLPG
GRGLLGLDGSEGIPGRKGHPGVPGYPGLDGAEGMKGELGDIGPPGPPVIIDREGVVISGA
PGDPGNMGTPGPPGDEGIVGLPGLPGAPGFPGLERDGIGPGGSPGIPGVKGEVGEPGRAT
TGIPGPPGRGGLPGLPGAPGLPGSPGPSFFPVIILTGSIGSPGEPGQRGLPGALGPKGYK
GEAGDCACDGGVTRAGLKGISGPPGPSGSPGVPGAKGDGGDPGSVGAPGLQGPLASAGQQ
GLPGLKGEKGDPSYAIVKGTRGDRGATAPRGPSGIPGTPGRDGLPGLPGPPGPPGDGGLG
FPGEKGLPGLPGSKGHQGETGSPGVGYPGPRGVRGPPGDTGMDGFPGQAGLPGPPGITLP
CIVPGAYGPPGTPGFPGPPGPKGSKGFSGIPGQPGLHGSKGQPGSPGIIGLQGEPGFPGP
RGEQGSQGLPGLDGTDGLPGKMGASGLAGIKGLPGDILGAESGTLGKHGRPGLPGDKGLT
GDIGFPGPKGLDGRPGLLGVKGEQGHPGYSGVPGLQGPPGPGSPFSIEGKPGPLGSAGLA
GAPGCQGPPGVKGVAGDIGPQGPAGMKGFPGLDGAPGSPGERGFLGPPGPFGQDGHSGFS
GPKGEKGSSGLLGFPGMPGLPGVPGVNGFKGTPGTDGEKGSLGAVGLQGQKGDRGDIGPP
GLPVLGTSEQALQIKGDKGDPGLAGLGGFPGPRGDKGIPGKPGQPGLPGPVGSPSKERRL
HGDPGFPGPHGQPGLPGQKGAQGIMGFPGMPGERGSDGTTGTLGFPGPIGLPGPKGEQGE
SVGVPGIAGPKGERGDPGFPGERGREGLKGEPGYPGNTGVNGHKGSPGDLGQEGPAGIHG
NAGLRGAPGPPGPPGQPGSVGFPGALGTAGPKGFHGFPGLNGLNGLPGTKGSPGTPGLSE
AGLKGPAGLPGTKGEEGSPGLERGAAGFPGPKGSSGDMGPPGPMGLPGLPGTPGVSLLSD
IHGRPGDAGVPGTHGSSGFPGPPGPRGPPGPASDQGDTGTPGFPGVLGLRGIKGDLGPTG
PIGLPGASGFKGARGEPGLMGMPGKDGPPGDPGYAGLKGEMGHRGLPGRPGAPGITPQPE
VLTAPAGLPGLPGIDGVPGFDGDPGFHGSAGKPGPKGLPGRSGLKGRDGLPGIPGIAGDP
GLSGAPGPQGFEGAAGKPGSHGLPGMPGRSVGIGYTLVKHSQSDQIPPCPMGMNKLWDGY
SLLYVEGQEKSHNQDLGFAGSCLPRFSTMPFIYCNINEVCYYASRNDKSYWLSTTAPIPM
MPVYSVQIPQYISRCSVCEAPSQAVAVHSQDITIPQCPQGWRSLWIGYSFLMHTAAGAEG
GGQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWLTTVEQEQQFVSAPPSETLK
AGQLRTRVSRCQVCMKNL
NT seq
5097 nt
NT seq
+upstream
nt +downstream
nt
atggggcgcacaggggcgctggtgctgctgctcctctggctgggcgcggagctggcgagt
gcgggtggaaagaagtcctacagtgggccatgtgggggccgtgactgcagtgctggatgc
aaatgttttccagagaagggtggacgtggtcgaccaggactgattgggcttcaagggcca
ataggaccaccgggatttactggcccagaaggtttgcctggagcaaaaggtgagagagga
gcagtgggccctcctggaccagctggacagaaaggtgacaagggtccaatgggagttcca
ggatttcagggcatcaatgggatcccaggtcaccctgggcagtctggacctagaggcttg
cctggcctcgatggctgcaatggtaccgttgggagtcgtggcatttctggaccagatggg
tttcctggcctacctggcctgtctggtcgtcctggcccgaaaggccttaaaggagaacct
gtttttgctcaaggcagtctcaaaggaatgaagggtgaaaatggtcttcctggattggat
ggagtacctggcccaaaaggtattccaggtccaataggtcctgcaggccctataggatta
caaggtttgcagggtccagtgggtccccctgggccaccaggtccaaaaggtaacatggga
ttaggctttcaaggagagaaaggagaaaagggcgatgtggggatgcctgggcctccaggt
cccccaccatctactggaatactggaattcatgggatttccaaaggggaagcaaggagat
aggggtgagccaggtcctcaaggattccctggagaccaaggattgcctggtaccccgggc
tttggaggtgttggagaaaaaggagaaaaaggagaaaaaggtgtgcctggcttaccaggt
ggcaggggtcttctgggactggatggatctgaaggaattccagggagaaagggccatcca
ggtgttccaggctatccaggactggatggagctgaaggcatgaagggtgaattaggtgac
atcggtcccccaggtcctcctgtcattattgacagggaaggtgtagtcatttcaggtgcc
ccaggtgaccctggaaacatgggaacacctggtcctcctggagatgaagggatcgttggt
ttaccaggccttccaggggctccagggtttccaggcctggagagagatggaataggccct
ggagggtctccaggtattccaggagtgaagggtgaagtgggagaacctggaagagcaaca
actggaataccaggccctccaggcagaggtggtttaccaggtctgcctggagcaccagga
ttgcctggttcaccaggtccttcatttttcccagtgataatcctgactggaagtattggg
tccccaggggagcctgggcaaagaggtctgccaggagctttgggtccaaagggctacaaa
ggagaggcaggtgattgtgcttgtgatggaggagttacaagagccggtctaaaaggcatc
tcaggtccaccaggtccatcaggaagccctggtgtacctggtgccaaaggtgatggtgga
gacccaggctctgtgggagcaccaggactgcaaggccctctggcttcagctggtcaacaa
ggacttccaggccttaagggagaaaaaggggatccatcctatgcaatagtcaaaggtact
cgtggggaccgtggtgcgacagcacccagaggaccttcaggcatcccaggaactccaggc
agggatggacttccaggcttgccaggcccaccgggccctccaggtgatggtggactaggt
ttcccaggtgaaaaaggtttgccaggattacctggctccaagggccatcaaggagaaact
ggttctcctggtgttggatacccaggtcctagaggagttcgtggaccaccaggtgacact
ggaatggatgggtttccaggacaagcaggtcttccaggccctccaggtatcaccttgccc
tgcatagttcctggagcatatgggcccccagggactcccggctttccaggaccaccaggt
cccaaaggcagcaaaggcttttctggcattccaggccaacctgggttacatgggtctaag
ggacagccagggtctccaggaataataggcttgcaaggggaacctggcttccctggacct
cgaggagagcaaggctcacaaggacttccaggactggatggaacagatggtttgcctggg
aaaatgggtgcttcaggcttagcaggaataaaaggattgcctggagatatattaggagct
gagagtggaaccctgggaaagcatggccgacctggactcccaggtgataaagggcttaca
ggtgatattggatttccaggaccaaaagggctggacggaagaccaggccttctgggtgtt
aaaggtgaacagggtcatccaggatattcaggtgtccctggattgcagggacctcctggt
cctggaagtcctttcagcattgagggaaaaccaggacccttggggtcagctggccttgca
ggagcaccaggctgtcaagggcctcctggagtcaaaggcgtggctggggatataggacca
caaggccctgctggtatgaaaggcttcccaggtcttgatggtgctccaggatctcctggg
gaaagaggattcttagggccacctgggccttttggtcaagatggacattcaggtttctct
gggccaaaaggtgagaaagggtcttctggcctgcttggtttccctggcatgccaggactg
cctggtgtccctggagtgaatgggtttaaaggaactcctggcacagatggagaaaaagga
agtctaggagctgtgggacttcaaggtcaaaaaggagacagaggtgatataggtccacca
ggtcttcctgttcttgggacttcagaacaggcactgcaaatcaaaggagacaaaggagat
cctggattagctgggcttggaggattcccaggacctcgaggtgataaaggaatcccaggg
aagcctggacagcctggtctcccaggtccagttgggtcaccaagcaaagagagacgtctt
catggtgacccaggtttccctggtccacatggacaacctggcctgccaggacagaagggt
gcacagggtatcatgggatttccaggaatgccaggagagaggggttcagatggcaccaca
ggaacacttggattcccaggacctattggccttcctggtccaaagggcgaacagggagag
tctgttggtgttcctggcattgctggaccaaaaggagagagaggagacccagggtttcca
ggagagagagggagagaaggactcaagggtgaaccaggctacccaggaaacactggggtg
aatggacacaaaggcagcccaggagatcttggccaagaaggaccagcaggaatccatgga
aatgctgggctgagaggagcccctggcccaccaggacccccaggacagccaggatctgtt
ggattccctggagctcttggaacagcaggacctaaaggctttcatggatttccaggttta
aatggtctgaatggcttgccaggcacaaaagggtcccctggaacaccaggtctgagtgaa
gctggattgaaaggacctgcaggtctcccaggtactaagggtgaagaaggctctccaggc
ttggaaagaggagctgcaggattccctggaccaaaaggctcatcaggagacatgggtccc
cctggtcctatgggactgcctggcctgccaggaacacctggagtttctcttctgtctgat
atacatgggagacctggagatgctggtgttccaggcactcatgggagttcaggttttcca
ggtcctccaggaccacggggaccccctggcccagcttctgatcaaggtgacacaggcact
ccaggtttccctggtgttcttggcttgcgaggcattaagggcgatttgggacccactggt
ccaattggactccctggagcatctggattcaaaggtgcaagaggtgaacctggcctaatg
gggatgccaggtaaagatgggcctccgggggatcctggttatgctgggctgaaaggtgaa
atgggccatcgaggtctccctggcagaccaggggctccaggaataaccccacagccagaa
gtactcacagcccctgcaggattacctggtctgccaggaattgatggtgttcctggcttt
gatggagatcctggattccatggctcggctggaaaaccaggcccaaaaggtttgccagga
agatctggcctgaaaggacgtgatggcttacctggaattcctggcatagctggggatcca
ggactttcgggtgccccaggaccacagggatttgaaggtgctgctgggaagccaggttcc
catggtttgccaggaatgcctggtaggagtgtgggcattggatacactctagtgaagcac
agtcaatcagatcagatccccccatgccccatgggaatgaataagctctgggatggctat
agcttattgtatgtggagggacaggagaagtcacataaccaggatcttggttttgctggc
tcatgtttgcctcgcttcagcaccatgccttttatttactgcaacataaatgaagtgtgc
tattatgccagccgaaacgacaagtcctactggctctccaccactgctcccatccccatg
atgcctgtatacagcgttcagatcccacagtacatcagccggtgctctgtgtgcgaagca
ccttcgcaggctgtggctgtgcacagccaggacatcaccatcccacagtgtccccagggc
tggcgcagcctgtggataggatactccttccttatgcacactgcggcaggggcagaaggt
ggaggccagtcccttgtctcacctggttcctgcctggaggatttccgagctactccattt
attgagtgcaatggtgctcggggaacatgccattactttgccaacaaatacagcttctgg
ctgacaacagtggagcaggagcagcagtttgtcagtgctcctccctcagagactctgaaa
gcggggcagcttcggactcgcgtcagccgctgccaggtgtgcatgaagaacttgtag
DBGET
integrated database retrieval system
