Parus major (Great Tit): 107204307
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Entry
107204307 CDS
T04864
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pmaj
Parus major (Great Tit)
Pathway
pmaj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107204307 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmaj03021
]
107204307 (PCF11)
03019 Messenger RNA biogenesis [BR:
pmaj03019
]
107204307 (PCF11)
Transcription machinery [BR:
pmaj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107204307 (PCF11)
Messenger RNA biogenesis [BR:
pmaj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
107204307 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
DNA_pol3_a_NI
DUF6980
Motif
Other DBs
NCBI-GeneID:
107204307
NCBI-ProteinID:
XP_015482678
Ensembl:
ENSPMJG00000001112
LinkDB
All DBs
Position
1:80903153..80924284
Genome browser
AA seq
1700 aa
AA seq
DB search
MSAPESSAGSSEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQ
IAKAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRST
WDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESNAPTSAVT
SGASTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQ
GSSSIASVPAPSKQHVSPTPHMTVKPPHQAAVQSEKIKPSPSPPLHDIKIVNRDPRLNRM
SQHSSHTKDQSHRKEFSPSLTSQSETKGSKTAQAEKQNSTKSEKSKSSEKTQKKELEQSK
AKSKSPSPLKNKLPDTKDSKSQECESTKVSDISKRDPRLKRHLQDKSEGKDEEVKEKRRS
TEKKEKEEHKTCEHRPVGSRNKVINGAVQKQDTTTEESEKQGGKQGRSSSRKRSRSRSPK
ARSPSTHSPKRRERRSPKRRLRSLSPTSSTPKIGKIRQIGPKQSHVEEGTQAARDERNSN
KRNVKQEVRDPRRLKKAQEERPQETATQHSAKASPDPKENAENWQGSKSGKRWKSGWEES
KNSQQNDEHQALVKSPHQRHRENWPAGKGILSPRAPKQQHRLSVDANLQIPKELTSASKR
ELLKKANDRLTSGEITQDEFLMVAHQIRQLFQYQEGKHRCNVWDSPTEEKCGLKKKPLLS
DAELTYYEHKAKLKRTQVQHSLSRLDLLDPDDILDYHIPDALLSGIECEQTKAKRGVQFD
RKEPFAERSRRHSPVSGTTRPFPENLSPLESRRRLEEQRATKGARGSDPYDSWGESDEFR
DALRQQGKSTAEFQKIDGDALCRFDSREERQLLGQAGVREEPRSPFTERFKRARYEDPEK
APFPESPGSRFGGIEAKQRISALMEDRPLFDGSPRPTAARVGVDGQGSPFVDGPAAGSSS
RIDGPAGQAAMRFEGPLVGTGASQFDGPLAGAGGAGALRFDGPPGQLAGALRFEGPPGQV
GGGGPLRFEGPLGPLRFEGPAGQPVGGPRFEGPGVGLRFEGPHGQPSGGLRFEGPHGQPM
GPRGQPGGGLRFEGPHGQPLGPHGQPGGGLRFEGPHLQPVGPHGQLGGGLRFEGPHGQPM
GPHGPSGGGLRFEGPHGPSGGGLRLEGSRGQPGLGPRLIDGPVHQGAGGLRFDGPLGRAG
PRFDGCHGAGFDGQPGQLSLLQRFDGIHGQPGPRLAPGQQAQARFDTAIPQRFDGPHQPA
SRFDLPLGLQGARFENVANHPASRLEMSPYGQGGPFVEHPGQGYNGPAHGMQFQRPDIFD
GSPGPNFNGPGGPGAQNFPLRAAGHYFEEKGLQGPQYGNFSNMPMGGNQVSLMSAQPGPY
GQGQQYLPNPGNFVQNPAGALSHSYPDNHLGQVDVNELFAKLLKTGILKLSKTDSASAQA
NETSAQPAAEEEDDDQNEDQNVPDLTNFIVEELRQRYDSVINRLYTGIQCYSCGMRFTTS
QTDVYADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERAKSQFFEKAH
EEVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDEKI
YHPSCYEDYQNTSSFDCTPSPSKTPSENPLNIMLDIVKQETEESCDSPKIKEEPDDTPPA
CAEESTPASTEIKTEPEESV
NT seq
5103 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccggagagcagcgctggcagcagcgaggcccgggaggacgcgtgccgcgac
taccagtcgtcgctggaggacctgacgttcaacagcaaaccgcacatcaacatgctgacc
atcctggccgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggctcctgcatcagagaagctacccgttatgtacctaatggattccattgtc
aagaatgtgggaagagagtatctcactgcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattgcgctccaca
tgggatgatatttttcctttgaagaaactatatgcacttgatgtcagagtcaactcatta
gatcctgcctggccaattaaacctctgcccccaaatgtgaatacttctagcatccatgtg
aatcctaagtttttaaataaatcgccagaggaatctaatgcacctacctctgctgtcact
tctggtgcctctactcctccagctgttcctgaaatacaaaagaatttgacacaggagcaa
ctgataaggcagcaattgcttgcaaagcaaaagcagttgttagaacttcagcaaaaaaaa
cttgagctggagctggaacaaactaaagcacagttggctgtatctcttagtgttcagcag
ggatcatctagtatagcttcagttccagcaccttccaagcaacatgtgtctcccacacct
catatgacagttaaaccacctcatcaggctgctgtgcaatctgaaaaaatcaaaccatcc
ccaagtcctccacttcatgacatcaaaatagtgaacagggatcctcggcttaataggatg
agtcaacattcttctcatactaaagatcagtctcataggaaagaattttctccaagtctg
accagtcagtctgagaccaagggaagcaaaacagcacaggctgaaaaacagaactcaaca
aagtcagaaaaatcaaaatcaagtgaaaaaacacagaagaaagaacttgaacagtccaaa
gcaaaatctaaatcgccatcccctttgaaaaataagctgcctgatactaaagacagtaaa
agccaggaatgtgaaagcactaaggtttctgacatcagtaagcgggatccaagactgaaa
agacatcttcaagataagtcggaggggaaggatgaggaggtcaaagaaaagaggagaagt
acagagaagaaggaaaaagaggagcataagacatgtgaacacagaccagtggggagcaga
aataaagttattaatggtgctgttcagaaacaagacacgacgacagaggagtcagaaaaa
cagggtggaaaacaaggaagatcaagtagtagaaagcggtcacggtcacgctctcctaag
gcaagatcaccctctacacattctccaaaaagacgagagaggagatcacctaaaagaaga
cttcggagtctatctcccacttcatcaactcctaaaattggaaagatacgtcagataggc
cctaagcagtctcatgttgaagaaggcacacaagcagcaagagacgaaagaaattctaat
aagagaaatgttaaacaagaggtgcgtgatccaaggagattgaaaaaagcccaagaagaa
agaccccaagagacagccacccagcattctgcaaaagcttctccagatccaaaggaaaac
gcagaaaactggcagggatccaaatcaggcaagaggtggaaatctggttgggaagaaagt
aaaaactcacagcagaatgatgaacaccaagcacttgttaaatcccctcaccaaagacat
cgggaaaactggcctgctggtaaaggaattctttcaccccgagcaccaaagcagcagcac
cggttaagtgtggatgcaaatttacagattcccaaagaattgacatctgcaagtaaaaga
gaattacttaagaaggctaatgaccgcttaacatctggtgaaataacacaggatgagttt
ctcatggtagctcatcagatccgacagctgtttcagtatcaggagggaaagcacagatgt
aatgtctgggatagccctacagaggaaaaatgtggcttgaaaaagaaacctcttctatcg
gatgcagaattaacatattatgaacataaagctaagctaaaaaggacacaagttcagcat
tcattgtcaaggcttgatctgttggatcctgatgatattttggattatcatatacctgat
gcattgctttctggaatagaatgtgagcagacaaaagccaagcggggggtacagtttgac
agaaaagaaccatttgcagaaagatcaaggagacactctcctgtaagtggcactacaaga
ccttttcctgaaaacctctcaccccttgagagtcgacgaagacttgaagagcagcgtgct
actaaaggagcaagaggttctgatccttacgacagctggggagaatcggatgaatttaga
gacgctctcagacaacaggggaaaagtacagcagagttccaaaaaatagatggggatgca
ctttgtaggtttgatagtcgtgaagaaagacagcttcttgggcaagctggtgttcgagag
gaaccaaggtcaccattcactgaacgtttcaaaagagctaggtatgaggatccagagaaa
gcaccatttccagaaagtccaggatcaagatttggaggtattgaagcaaagcagaggata
agtgcactgatggaagacagacctctatttgatggctcacctagaccaactgctgcaagg
gttggagtagatggacaaggaagtccttttgttgatggtcctgctgctggttcaagttcc
agaattgatgggccagctggacaggctgctatgagatttgaggggcctttggtggggaca
ggtgcatctcagtttgatggaccactggcaggagcagggggagctggagccctgagattt
gatgggccaccaggacagctggcaggggccctgagatttgaaggacccccaggtcaggtt
ggtggaggaggtccgctgcggtttgagggacctcttgggcctttgcggtttgaggggcct
gcagggcagcctgtaggtggtcctagatttgaaggccctggagttggtctcaggtttgag
ggtcctcatggtcagccttcaggtggtctcaggtttgaggggcctcatggtcaacctatg
gggcctcggggtcaaccagggggtggtctcaggtttgagggaccccatggtcaacccttg
gggcctcatggtcaaccagggggtggcctcaggtttgaggggccacatttacagccagtg
gggccccatggacaacttggaggtggcctcagatttgaggggccacatggtcagcccatg
gggccacatggaccatcaggtggtgggctcaggtttgaggggccacatggaccatcgggt
ggtggactgagattggaaggatcacgtggtcagccgggtctaggtcctaggttgattgat
ggaccagtacaccagggagctggtggacttagatttgatggtcctcttggtcgggctggt
ccaagatttgatggctgtcatggagctggatttgatggtcagccaggacagctttctctc
ctgcaaagatttgatggaattcatggacagcctggtccaaggttggcacctggccaacag
gcacaagcaagatttgacacagccatacctcaaagatttgatggacctcaccagccagcc
tctaggtttgacttgccccttggccttcagggtgcgcgttttgaaaatgtagctaaccat
cctgcctcaagactagaaatgtcaccatatggacaaggtggtccgtttgttgaacatcct
ggccagggctacaatggaccagctcatggaatgcagttccagagacctgatatatttgat
ggttcacctggaccaaatttcaatgggccaggtggcccaggagcccagaacttcccactg
agagcagctggacattactttgaagaaaaaggtctccagggtcctcaatatggaaatttc
agtaatatgccaatgggaggtaatcaggtttctctcatgtctgctcaaccaggaccttat
ggtcaaggtcagcagtatttgccaaatcctggaaattttgtccagaaccctgcaggagcc
ctttcccattcgtatcccgataaccaccttggacaggttgatgtgaatgaattgttcgct
aaactgctgaaaacagggatactcaaattgtccaaaactgattctgcttcagcacaagca
aacgaaacatcggcccagccagctgctgaagaagaagatgatgatcagaatgaagatcaa
aatgttccagacctcactaacttcatagttgaagaacttagacagcgttatgatagtgtt
ataaatcggctgtacactggaattcagtgttactcctgtggaatgagattcactacttca
cagacagatgtttatgcagatcatttagattggcattatcgccagaaccggacagaaaaa
gatgttagcagaaaaattacacacaggagatggtactacagtttaacagactggattgaa
tttgaagaaatagcagatctagaggagcgtgctaaaagccagttctttgaaaaagctcat
gaagaggttgtgttgaagacgcaggaagctgcgaaagagaaggagtttcagagtgtccca
gctgggccagctggtgcagtcgagagctgtgaaatttgccaagaacaatttgaacagtat
tgggatgaggaagaggaagagtggcacttgaagaatgccatcagggtagatgaaaagatt
taccatccatcttgttatgaagattaccagaatacatcatcatttgattgcacaccatct
cccagcaagactccttcagaaaatccactaaatataatgttggacattgtcaaacaagaa
acagaagagtcctgtgactcacctaaaatcaaagaagaacctgatgacacccctcctgcc
tgtgcagaagagagcacacctgcatctacagaaatcaaaacagaacctgaggagtctgtt
taa
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