Parus major (Great Tit): 107204353
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Entry
107204353 CDS
T04864
Symbol
RTCB
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pmaj
Parus major (Great Tit)
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pmaj03016
]
107204353 (RTCB)
Enzymes [BR:
pmaj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
107204353 (RTCB)
Transfer RNA biogenesis [BR:
pmaj03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
107204353 (RTCB)
Prokaryotic type
tRNA splicing ligases
107204353 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
107204353
NCBI-ProteinID:
XP_015482810
Ensembl:
ENSPMJG00000008395
LinkDB
All DBs
Position
1A:51130043..51140476
Genome browser
AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIDKNCWRIKKGFVPNMRVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMSDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDEIYNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
AEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHEAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaacgatgagctgcagtacctggacaagatcgacaagaactgctgg
cggatcaagaagggcttcgtgcccaacatgcgtgtggagggcgttttctacgtgaacgac
ccgctggagaagctgatgttcgaggagctgcgcaatgcctgccgcggcggaggtgcgggt
ggcttcttgcctgctatgaaacagattgggaatgtggctgcattgccgggcattgttcac
agatcaataggccttccagatgtccattctggctatggatttgctattggcaacatggct
gcctttgatatgagtgatcctgaagcagtggtttcaccaggtggtgtcggctttgacatc
aactgtggtgtccgcttgttgcggacaaatttggatgaaagtgatgtgcagcctgtgaag
gaacagctcgcccaggctatgtttgaccacattcctgttggtgtcggctccaaaggtgtc
atccccatgaatgccaaggatttggaagaggcactggagatgggtgtggactggtctctc
cgggagggctatgcctgggcagaggacaaggagcactgtgaggaatatggaagaatgcta
caggctgaccccaacaaagtctcttcaagggcaaagaaaaggggcctgcctcagctgggg
accctgggagctggaaatcattatgctgagatccaggtggtggatgagatttacaacgaa
tatgctgccaagaaaatgggcattgaccacaaagggcaggtgtgcgtgatgatccacagt
ggaagcagagggctgggccaccaggttgccacagatgcactggtggctatggaaaaagct
atgaaacgggacaaaatcatagtgaatgatcgccagttggcatgtgccaggattgcctct
gcagagggacaggattacctgaagggaatggcagctgctggcaactatgcctgggttaac
cgctcttccatgactttcctaacacgacaggcctttgccaaagtcttcaacacaacccca
gatgaccttgacatgcacgttatctatgatgtgtctcacaacattgccaaagtggaacag
catgtagtggatggaaaggagaggactctgctggtgcacagaaagggatcaaccagggcc
ttccctcctcaccatcctcttattgctgttgattatcaactgactggacagcccgttttg
atcggtggcacaatgggcacttgcagctatgtcctcactggcacagagcaaggcatgact
gagacctttggaactacttgccatggagctggtcgtgcactgtctcgtgccaaatctcga
cgtaacttggacttccaggacgtactggacaagctggctgacatgggcattgccatccgt
gttgcttctcccaaactggtcatggaagaagcaccagagtcttacaagaacgtgactgat
gtggttaatacctgccacgaagctggcatcagcaagaaagccattaaactgagacctatt
gctgttataaaaggctag
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