Parus major (Great Tit): 107204365
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Entry
107204365 CDS
T04864
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
pmaj
Parus major (Great Tit)
Pathway
pmaj03013
Nucleocytoplasmic transport
pmaj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107204365 (UPF2)
03015 mRNA surveillance pathway
107204365 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmaj03019
]
107204365 (UPF2)
Messenger RNA biogenesis [BR:
pmaj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107204365 (UPF2)
mRNA cycle factors
P-body specific factors
107204365 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
107204365
NCBI-ProteinID:
XP_033370231
Ensembl:
ENSPMJG00000001352
LinkDB
All DBs
Position
1A:complement(5421104..5473475)
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AA seq
1307 aa
AA seq
DB search
MITSDGGICCSSGFFSQSEVCLGNTMPAERKKPANMEEKESQLNNKEKEFGERRPVSTRE
KPKEDVKVGMKRETLKIPEDKKKKMEEDKRKKEDKERKKKEEDKVKAEEEQKKKEEEEKK
KLEEEEKKKQEEEEKKKQEEEAAQLKEKEEAHQLHQEAWERHQARKELRSKNQNAPESRP
EENFFSRLDSSLKKNTAFVKKLKTITEQQRDSLSHDFNSLNLSKYIAEAVASIVEAKLKI
SDVNCAVHLCSLFHQRYADFAPSLLQAWKKHFEARKEEKTPNITKLRTDLRFIAELTIVG
IFTDKEGLSLIYEQLKNIINADRESHTHVSVVISFCRHCGDDIAGLVPRKVKTVAEKFNL
SFPPSEIISPEKQQPFQNLLKEYFTSLTKHLKRDHRELQNIERQNRRILHSKGELSEDRH
KQYEEFAMSYQKLLANSQSLADLLDENMPDLPQEKPTPEEHGPGIDIFTPGKPGEYDLEG
GIWEDEDARNFYENLIDLKAFVPAILFKDNEKYSQNKDSSKDESRDSKDAKDNKEAAGNE
DLELELENLDINDDALELDCGDEAEDLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLP
NCVNRDLIDKAAMDFCMNMNTKANRRKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDV
AEDLCSMLKGDFRFHVRKKDQINIETKNKTVRFIGELTKFKMFSKNDTLHCLKMLLSDFS
HHHIEMACTLLETCGRFLFRSPESHLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCN
PPPAEKTVKKKRPPLQEYIRKLLYKDLSKVTTEKVLRQMRKLPWQDAEVKDYVICCMINI
WNVKYNSIHCVANLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLG
ELYNYRMVESAVIFRTLYSFTSFGVNPDGSPSPLDPPEHLFRIRLVCTILDTCGQYFDRG
SSKRKLDCFLVYFQRYVWWKKSLDVWTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEEA
VRQVQDLEREFLIKLGIVNDKDSKDSITEGENLEEDEEEEEGGAETEEQSGNESEVNEPE
EEEGSDNEEEEGEEEEEENTDYLTDSNKENETDEENTEVMIKGGGLKHVPCAEDEDFIQA
LDKMMLENLQQRSGESVKVHQLDVAIPLHLKSQLKKGPPLGSGEGESESGDTMPFVMLTR
KGNKQQFKILNVPMSSQLAANHWNQQQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLA
QRPAPANTNRERRPRYQHPKGAPNADLIFKTGGRLHCSLCPDTLVLC
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
atgataactagtgatggaggaatttgttgctcttcgggatttttcagccagtcagaggtt
tgcctgggtaacacaatgccagctgagcgcaaaaagccagcaaatatggaagaaaaagaa
tctcagttaaataacaaagaaaaagaatttggtgaaaggcgaccagtgagcaccagggag
aagccaaaagaagatgtgaaggttggcatgaagagggagaccttaaaaattcctgaagat
aaaaagaaaaaaatggaagaggataaaagaaagaaggaagacaaggagcggaagaagaaa
gaagaggataaagtaaaggcagaagaggagcaaaagaagaaagaagaagaagaaaaaaag
aaacttgaagaagaggagaaaaagaaacaagaggaggaagagaaaaagaaacaagaagaa
gaagctgctcagctgaaggagaaagaggaagcacatcagctccatcaggaggcttgggag
cgccatcaggcaagaaaagagctccgcagcaaaaaccagaacgcaccggagagtcgtccg
gaggaaaacttcttcagcagactggactccagtctgaagaagaacacagcttttgttaag
aagctaaaaaccattacagagcaacaaagggactccttgtcccatgactttaatagcttg
aatttaagcaaatacattgcagaagcagtggcttctattgtggaggccaaactgaaaata
tcagacgtgaactgcgctgtgcacttgtgttccctctttcaccagcgatatgctgatttt
gctccttcattacttcaggcttggaaaaaacattttgaagcaaggaaagaagagaagact
cccaacattaccaagttaagaactgatttgcgtttcatagcagaattgacaatagttggg
attttcactgacaaggaaggtttgtctttaatctatgagcagcttaaaaatattattaac
gctgaccgagaatctcacactcacgtttctgtggttatcagcttttgtcggcactgtgga
gatgacattgctggtttggtaccaaggaaagtaaaaactgttgcagagaagtttaacttg
agctttcctcctagtgagataattagcccagagaaacaacagcccttccagaatttgttg
aaggaatactttacatctttgaccaaacacctgaaaagggaccacagggagctacaaaat
attgaaagacaaaacagacgcattctccactccaagggagagctgagtgaagatcgacac
aagcaatatgaggaatttgcaatgtcatatcagaagctgttggcaaattctcagtctctg
gctgatcttttggatgagaacatgcctgaccttccccaagagaaaccaacccctgaggaa
catggacctggtattgatattttcacaccaggaaagcctggagaatatgacctggagggg
ggtatctgggaagatgaagatgctagaaacttctatgagaatctcattgatttgaaggct
tttgtgccagcaattttgtttaaagataatgaaaaatattcccagaacaaggattccagc
aaagatgaatcaagagattcaaaagatgccaaagataataaggaagcagctgggaatgag
gatctggaattggagctggagaacctggatattaatgatgatgcgctggagttggactgt
ggagatgaggcagaagatcttacaaagaagcttcttgatgagcaagaacaagaggatgaa
gaagccagtactggatctcatttaaaactcatagtggatgcttttcttcagcagcttcca
aattgtgtcaacagagacctcatagacaaggcagcaatggatttttgcatgaatatgaat
acaaaagccaacagaagaaaactggtacgagcacttttcatagttcctagacaaagattg
gatttgctaccattttatgcaagactggttgccacattgcatccctgtatgtctgatgta
gcagaggatctctgttccatgctgaaaggggatttcaggttccatgtaagaaaaaaggac
cagatcaacattgaaacaaagaataaaactgtgagatttattggtgagcttaccaagttt
aagatgttctccaaaaatgatactctccactgtttaaagatgcttctgtcagacttctct
catcatcatattgaaatggcttgtaccttgctggaaacctgtggaagattcctcttcaga
tcaccagaatctcacttaagaaccagtgttcttttggaacaaatgatgaggaaaaaacaa
gcaatgcatcttgatgcacgctatgttacaatggtagaaaatgcctattactactgtaat
ccccctccagctgaaaaaactgtgaagaaaaaacgtcctcctttgcaagaatatatccgt
aagcttctttacaaggatctctccaaggtcaccacagaaaaggtcctgagacagatgcgc
aagctgccttggcaggatgcagaagttaaggactatgttatatgctgtatgatcaacatc
tggaatgtgaaatataatagtattcactgtgtagccaacctcttagcagggttggtcctt
taccaggaagatgttggaattcatgttgtggatggagtgctagaggatattcgactagga
atggaggttaatcaaccaaagttcaaccaacggcggatcagcagtgccaagtttttgggg
gagctttacaactatcgaatggtggagtcagctgtaatatttagaactctgtattccttc
acctcatttggtgtgaaccctgatggcagtcctagtccactggaccctccagaacatctg
ttcagaatcagactcgtctgtactatcctcgatacctgtgggcagtattttgacagagga
tccagcaagcgaaaacttgattgcttccttgtatattttcagcgctatgtgtggtggaaa
aaaagtctggatgtttggacaaaggaccacccttttcctatagacatagactatatgatc
agtgatacactggaactgctgagaccaaagataaagctctgcaattctctggaagaagct
gtcagacaggtgcaagacttggaacgagaattcttaataaaattgggaattgtgaatgac
aaagattccaaggattccattacggaaggagagaatctggaagaggatgaagaagaggag
gaaggtggagcagagacagaggaacaatctggaaatgaaagtgaagtaaatgagccagaa
gaagaggagggctctgacaatgaggaagaagagggtgaagaagaagaggaggaaaacacc
gattatcttacggactccaataaggaaaatgaaaccgatgaggagaatacagaggtaatg
attaaaggaggaggactgaagcatgtcccttgtgcagaggatgaggacttcattcaggcc
ttggataaaatgatgctggaaaaccttcagcaacggagtggtgaatctgttaaagtgcat
cagctggatgttgctattcctctgcatctcaaaagtcagctgaagaagggccccccactt
ggaagtggggaaggagagtcagagtctggggacacgatgccatttgtcatgttaacacga
aaaggcaacaaacagcagtttaagattctaaatgtaccgatgtcttcccaacttgctgca
aatcattggaaccaacagcaagcggaacaggaggagagaatgaggatgaaaaagctcact
ttggatatcaatgaacggcaggaacaagaggactatcaggaaatgttacagtctctggca
cagcgtccagctccagcaaatactaatcgtgagcggcggcctcgttaccagcatccgaag
ggagcacctaatgcagatctaatctttaaaaccggtgggaggttgcactgcagtctctgc
ccagacaccctcgtgctttgttga
DBGET
integrated database retrieval system
