Parus major (Great Tit): 107204404
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Entry
107204404 CDS
T04864
Symbol
PCDH9
Name
(RefSeq) protocadherin-9 isoform X2
KO
K16498
protocadherin delta 1
Organism
pmaj
Parus major (Great Tit)
Pathway
pmaj03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
107204404 (PCDH9)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pmaj01009
]
107204404 (PCDH9)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pmaj04515
]
107204404 (PCDH9)
Protein phosphatases and associated proteins [BR:
pmaj01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
107204404 (PCDH9)
Cell adhesion molecules [BR:
pmaj04515
]
Cadherins
Protocadherins
107204404 (PCDH9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
RET_CLD1
Big_9
MAP17
RCR
V_ATPase_I
EphA2_TM
DUF6249
7tm_3
DUF6377
Motif
Other DBs
NCBI-GeneID:
107204404
NCBI-ProteinID:
XP_015482959
LinkDB
All DBs
Position
1:52390546..53056517
Genome browser
AA seq
1203 aa
AA seq
DB search
MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
SLVYRLVSKAGDAPLVKVSSNTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
TVSDVNDNRPVFKESQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
RFFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
RYIISPINGTVYLSEKDPINTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFSQPVIELSVSE
NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
AGENKAVTLSILNDNENFVLDPYSGVIKSNVSFDREQQSSYTFDVKAVDGGHPPRSSTAK
VTINVMDVNDNSPVVIYPPSNTSFKLVPLSAIPGSVVAEVFAVDIDTGMNAELKYTIVSG
NNKGLFRIDPVTGNITLEEKPTPNDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIVAGAMVVIVVIFVTVLVRCRH
ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
NGTISLPAELEEQSIGRFDWGTAPPSTFKPNSPDLAKHYKSASPQSAFHLKPDTPVSVKK
HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQSQRRVTFH
LPDGSQESCSDSGLGDHEPVGGGTLISHPLPLVQPQDEFYDQASPDKRTEADGNSDPNSD
GPLGPRGLAEATEMCTQECLVLGHSDNCWMPPSLGPYQQPKSPLSTFAPQKEWVKKDKLV
NGHTLTRTWKEDSNRNQFSDRKQYGSSEGHFNTGNHMTDIPLANLKSYKQAPGSVESPKE
HQL
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atggacctgagggatttttacctgttggccgctttgattgcctgtttaaggctggattct
gctatagctcaagaacttatttacactattagagaggagctgcctgaaaacgtgcccata
gggaacataccaaaggacctgaacatttctcatatcaatgctgccacagggaccagtgcc
agccttgtctacagactggtgtctaaagcaggggatgcacctctggtcaaagtgtccagt
aacacaggggaaatctttacaacatctaacagaatagacagagaaaaactatgtgctgga
gcttcctatgcagaagaaaacgagtgtttctttgaacttgaagtggtgattcttcccaat
gacttttttaggctgatcaaaataaaaatcattgtaaaggacactaatgacaatgcgcct
atgtttccatcccctgtcatcaatatctccatcccagaaaatactctgatcaacagtcgc
tttccaatcccatcagctacagatcctgacacaggtttcaatggtgtgcagcactatgag
ttgttaaacgggcagagtgtctttggactagatattgtagaaactccggaaggggagaaa
tggcctcagctgattgtgcagcagaacttggacagagagcaaaaggacacctacgtgatg
aaaatcaaagtggaggatggaggtaccccccagaaatccagcacagctatcctgcaagtc
acagtaagtgatgtcaatgataacaggccagtctttaaagagagtcaagtagaggtccat
ataccagagaatgcccctgtaggcacctctgtaattcagcttcatgctacagatgctgat
ataggaagcaatgcagaaatcagatatatttttggtgcccaagtcgcccctgcaaccaaa
agattttttgctttaaacaacaccacagggctgattacagttcagaggtccttagatcga
gaagagactgctattcacaaagtgacagtgctggctagtgatggtagctctacaccagcc
cgggcaactgtcaccatcaatgtcactgatgtaaatgataaccctcctaacatagacctc
aggtacataataagtcccatcaatggcacagtgtacttatctgagaaagatcccatcaat
acaaagattgccctaattacggtttcagataaggacactgatgtgaatggcaaagtgatc
tgtttcattgagagagaggtccccttccacttgaaagcagtttacgacaaccagtatttg
ttagagacctcttccttgttggactatgaggggaccaaagaattcagctttaaaattgtg
gcttctgattctggcaagcccagtttgaaccagactgccctggtaagagttaagctggag
gatgaaaatgacaaccctccaattttcagccagcctgtaattgagctgtcagtttctgaa
aacaaccggcgtggtctatacttaacaactattagtgccacagatgaagacagtgggaaa
aatgcagacattgtttatcagcttggtcctaatgcctcctttttcgatctggatcgaaag
acaggagttttgacagcctccagagtttttgacagagaagagcaggaacgtttcattttc
actgttacagcccgagacaacggcacccctcctttgcagagtcaagcagctgtaattgtt
actgtgctggacgaaaatgacaacagtcccaaatttactcataatcatttccagtttttt
gtatcagagaacttaccaaagtatagcacggtgggggtgatcacagtgacagatgcagat
gctggggaaaataaagcagtgaccctatccatcttgaatgacaatgaaaactttgtgctg
gatccgtactctggagttataaagtccaacgtttcttttgatcgagaacagcagagctct
tacacgtttgatgttaaggcagtggatggagggcatcctcctcgctcttctacagcgaaa
gtaacaataaacgtgatggatgttaatgacaacagtcctgttgtcatctacccaccttct
aatacttcttttaagctagtgccactctcagcaattccaggatcggtggtagccgaagtc
tttgctgtggatatagacactggcatgaacgctgaactgaagtacacgattgtaagtggc
aataacaagggtttgtttcggattgatccagtgacaggtaatatcactctggaagaaaaa
ccaactcctaatgatgtggggctgcatcgcttagttgtcaacataagtgatctgggttat
cccaaatctctgcatactcttgtgcttgtttttttatatgtaaatgatactgctggaaat
gcctcttatatttatgacttgatacgcaggactatggaaacacctttggatcggaacata
ggggacagtagccaaccttaccaaaatgaggactatctcactatcatgatcgctattgtg
gcgggtgccatggttgtcatagtggtgatatttgtcacagttcttgttcgctgtcgacat
gcgtccagattcaaagctgcccagaggagcaagcaaggtgctgagtggatgtctcccaat
caggaaaacaagcaaaacaagaaaaagaaaaggaagaaaaggaaatctccaaagagctcc
cttttgaactttgtgaccattgaggagtccaaacctgatgatgcagttcatgaacctatc
aacgggacaataagccttccagcggagctggaggagcaaagtataggaagatttgattgg
ggcacagcaccaccatcaacctttaagcctaacagtcctgatcttgccaagcattacaaa
tctgcctctccgcagtctgcttttcatctcaaacctgacactccagtttcagtgaaaaag
caccatgtgattcaggaactccctttggacaacacctttgttggtggttgtgacaccctt
tccaaacgctcttccactagttcagatcacttcagtgcctcagagtgcagttcccaagga
ggcttcaagacaaagggccccttacacaccagacagtcccagcgccgtgttacatttcac
ctccccgatggctcccaggaaagctgcagtgacagtggtctgggagaccacgagccagtg
ggtggtggaaccctgatctcacaccctcttcctctggttcagccgcaggacgaattctac
gaccaggcttcaccggacaagaggactgaagctgacggcaattctgaccccaactcggat
ggacctcttggtccacgaggattagctgaagctacagagatgtgtactcaagaatgcctg
gttttgggtcactcagacaactgttggatgcctcctagcttgggcccataccagcagcca
aagtctcctctctccacctttgcacctcagaaagaatgggttaagaaggacaaactagtt
aatggacacacattgaccaggacctggaaagaagatagcaacagaaaccagttcagtgat
cgaaagcagtatggttccagtgagggccatttcaacactggcaaccacatgactgacatt
cctctggccaacttgaagtcttataaacaggccccgggatctgtggagagtccaaaggag
caccagctataa
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integrated database retrieval system
