Parus major (Great Tit): 107205242
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Entry
107205242 CDS
T04864
Symbol
RAG1
Name
(RefSeq) V(D)J recombination-activating protein 1
KO
K10628
V(D)J recombination-activating protein 1 [EC:
2.3.2.27
]
Organism
pmaj
Parus major (Great Tit)
Pathway
pmaj04068
FoxO signaling pathway
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
107205242 (RAG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pmaj04121
]
107205242 (RAG1)
Enzymes [BR:
pmaj01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107205242 (RAG1)
Ubiquitin system [BR:
pmaj04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
107205242 (RAG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAG1
RAG1_imp_bd
zf-RAG1
zf-C3HC4
zf-C3HC4_2
zf-RING_6
DUF5981
Motif
Other DBs
NCBI-GeneID:
107205242
NCBI-ProteinID:
XP_033370875
LinkDB
All DBs
Position
5:19001779..19005556
Genome browser
AA seq
1052 aa
AA seq
DB search
MSTLGLSGDLVSVRLQTSVASQMELPEELQHTYTKFSEWKFKLFKLPSFEKTPSDDSQLI
GKDQAEEAVSSNKEFILHKDEAVPRGEKMELTGNRQGLEEDAHAMKTQDNRVHQNNLKQL
CRICGVSFKTDCYKRTYPVHGPVDDETLCLLRKKEKTATSWPDLIAKVFKIDVRGDVDTI
HPTQFCHNCWSIIHGKFSNTLCEVYFPRNSAMEWQPHSPNCDVCHTAKRGVKRKSQPPSV
QRGKRVKTTGELARLNRGIKNQAQINNKNLMKDIVNCKDIHLSTKLLSIDYPVDFIKSIS
CQICDHILADPVETTCRHLFCRTCILKCIRVMGSYCPSCWYPCFPTDLVTPVKSFLNILD
NLTIRCPVKECDEEILHGKYGQHLSGHKEMKDRELCSYINKGGRPRQHLLSLTRRAQKHR
LRELKRQVKAFAEKEEGGDIKAVCMTLFLLALRAKNEHKQADELEAIMQGRGSGLHPAVC
LAIRINTFLSCSQYHKMYRTVKAVTGRQIFQPLHALRTAEKALLPGYHPFEWKPPLKNVS
TNTEVGIIDGLSGLPLSIDDYPVDTIAKRFRYDAALVCALKDMEEEILEGMKAKNLDDYL
NGPFTVVVKESCDGMGDVSEKHGSGPAVPEKAVRFSFTVMNISVAHGNESKRIFEEVKPN
SELCCKPLCLMLADESDHETLTAILSPLIAEREAMKNSELLLEMGGILRTFRFIFRGTGY
DEKLVREVEGLEASGSTYICTLCDATRLEASQNLVFHSITRSHAENLERYEIWRSNPYHE
SVDELRDRVKGVSAKPFIETVPSIDALHCDIGNATEFYRIFQMEIGELYKNPDVSKEERK
RWQLTLDKHLRKKMNLKPMLKMSGNFARKLMSKETVEAVCELIKCEERHEALKELMDLYL
KMKPVWRSSCPAKECPELLCQYSYNSQRFAELLSTKFKYRYEGKITNYFHKTLAHVPEII
ERDGSIGAWASEGNESGNKLFRRFRKMNARQSKVYEMEDVLKHHWLYTSKYLQKFMNAHK
TLKSQSFTIDSGGSLGDSLPLEVLENNDSSEL
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atgtctacactgggactgagtggtgatcttgtttctgtgagattgcagacgtcagtagca
tcacaaatggagctacctgaagaacttcagcatacatacacaaaattttctgaatggaaa
ttcaagctctttaaattgccatcatttgaaaaaacaccctctgatgacagccagctcata
ggcaaagatcaggcagaagaggctgtttcttcaaacaaagaattcatcctgcataaagat
gaagcagtgccaagaggagaaaagatggagttaacaggcaataggcagggacttgaggaa
gatgcccatgccatgaaaacacaagacaatagagtgcatcagaacaatctgaagcaactc
tgccgcatctgtggagtttcatttaaaactgattgctacaagagaacctacccagtgcat
gggccagtggatgatgaaactctgtgccttctgagaaagaaagaaaaaacagcaacctct
tggccagatcttattgctaaagttttcaagattgatgtgcgaggggatgtcgatactatt
catcccactcaattttgtcacaactgttggagtattatacatggaaaattcagtaatact
ctatgtgaagtatattttcctaggaacagcgcaatggagtggcaaccccattccccaaac
tgtgatgtgtgccatactgccaaacgaggagtcaagagaaaaagccagcccccaagtgta
caacgtggtaaacgtgtcaaaaccactggagaacttgctcggctaaacagaggtataaag
aaccaagcacagataaacaacaaaaatttaatgaaagacattgtcaattgcaaggatata
catctcagcaccaagctgctttcaattgattacccagtagatttcattaaatccatttct
tgccagatttgtgatcatattttggcagatccagtggaaacaacgtgcagacacttgttt
tgcagaacttgcatccttaaatgtatcagggttatgggcagctattgcccctcctgctgg
tatccttgctttcctaccgatctggtaaccccagtgaaatccttcctgaacatccttgat
aacctgactataagatgccctgtaaaggaatgtgatgaagagatcttgcacggaaaatat
ggccaacacctctctggtcacaaggagatgaaagacagagagctctgtagctacatcaat
aaaggtggtcgaccaaggcagcacctcctgtccttgacgagaagagctcagaaacatcgt
ctgagggaactgaaacgtcaagtcaaggcttttgctgagaaagaagaaggaggtgatata
aaggctgtatgcatgactttgttcctgctagctttgagagcaaaaaatgaacacaaacaa
gcagatgaactggaggctataatgcaagggaggggatctggacttcatcccgctgtctgt
ttggccatccgaatcaacacgtttctcagctgtagtcagtatcataaaatgtatagaaca
gtaaaagctgtcacggggaggcagatcttccagcctttgcatgctcttcgcactgctgag
aaagccctcctaccaggttatcacccatttgagtggaaacctcccctgaaaaatgtatcc
actaacacagaagtgggaattatagatggactatcaggactgccactgtcaatcgatgat
tacccagtagacacaattgcaaagagattccgatatgatgcagccttggtctgtgcctta
aaggacatggaggaggagatcttggaaggcatgaaagcaaaaaacctggacgactatctg
aatggccccttcactgtggtagtaaaagagtcctgtgatggaatgggagacgtcagtgaa
aagcatggaagtgggcctgctgtccccgagaaggctgttcgattttctttcacagtcatg
aacatttctgtagcacatgggaatgaaagcaagaggatctttgaggaagtaaagcccaat
tcagagttgtgctgtaagcccttgtgccttatgctggctgatgaatcagatcatgaaact
ctgacagcaattctgagccccctcatagcagaaagagaggctatgaaaaacagtgagctg
ctgcttgaaatgggaggcatcttgagaacatttaggttcatctttaggggtacaggatat
gatgagaaactcgtgcgggaagtggaaggactggaggcctcaggttccacttacatttgt
accctgtgtgatgcaacccgcttggaggcatcccagaatctggtcttccactccataacc
aggagccatgctgaaaatctggagcgatatgaaatatggaggtccaacccatatcacgag
tctgttgatgagctccgtgacagagtgaaaggtgtttcagccaaaccttttattgagact
gttccctccatagatgcattgcactgcgacattggcaatgcaacagaattctacaggatt
ttccagatggagattggtgaactttacaagaatcccgatgtgtctaaagaggagaggaag
aggtggcagttgactcttgacaaacaccttaggaagaagatgaacctgaagcctatgttg
aagatgagtggaaattttgctagaaagcttatgtccaaagagactgtagaggcagtatgt
gaattaataaagtgtgaggaaaggcatgaagccctaaaagaactaatggacctttatctg
aagatgaagccagtgtggcggtcctcatgccctgccaaggagtgcccagaactgctctgc
cagtacagctacaattcacagcgttttgcagaactcctatctacaaagttcaagtacagg
tatgagggcaagattacaaattatttccacaaaacacttgctcatgttcctgaaatcatt
gaaagagatggatccattggggcctgggcaagtgaaggaaatgagtccggaaacaaactg
tttaggaggttccgaaaaatgaatgccaggcagtccaaagtctatgagatggaggatgtc
ttgaagcaccactggctatatacctccaagtacctccagaagttcatgaatgcccataaa
acattaaaaagccagagcttcaccattgattcagggggtagtttaggtgactccttgcca
ctggaggtcttggaaaacaatgattcatcagaactctga
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