Parus major (Great Tit): 107205770
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Entry
107205770 CDS
T04864
Symbol
IGHMBP2
Name
(RefSeq) DNA-binding protein SMUBP-2 isoform X1
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
pmaj
Parus major (Great Tit)
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pmaj03009
]
107205770 (IGHMBP2)
03012 Translation factors [BR:
pmaj03012
]
107205770 (IGHMBP2)
Enzymes [BR:
pmaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
107205770 (IGHMBP2)
5.6.2.5 RNA 5'-3' helicase
107205770 (IGHMBP2)
Ribosome biogenesis [BR:
pmaj03009
]
Eukaryotic type
Other ribosome biogenesis factors
107205770 (IGHMBP2)
Translation factors [BR:
pmaj03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
107205770 (IGHMBP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
AAA_30
R3H
AAA_19
zf-AN1
Viral_helicase1
Helicase_RecD
ResIII
DEAD
nSTAND3
AAA_16
AAA_22
SLFN-g3_helicase
UvrD-helicase
Flavi_DEAD
AAA_25
IstB_IS21
T2SSE
ABC_tran
AAA
PhoH
DAP3
Herpes_ori_bp
AAA_33
NTPase_1
Glyco_transf_21
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
107205770
NCBI-ProteinID:
XP_015486120
Ensembl:
ENSPMJG00000006614
LinkDB
All DBs
Position
5:complement(6599729..6622770)
Genome browser
AA seq
980 aa
AA seq
DB search
MAAEAAERHLELLRDEREAELEQSRAWQESVSLKELQRRGVCLLKLQVTSQRTGLYGRLL
VTFQPRKWDSDAELPSNSFGPGDIVGLYESAGQGDPLCTGVVTRVTPKAVTVALEEPRDG
ELAVDHERSFRLLKLANDVTYNRLKRALTALKQYRGGPASDLIDVLFFASAPRAFPETKP
LEFFNASLDESQQEAVSFSLAQRELAIIHGPPGTGKTTTLVEIILQAVQQGLKVLCCAPS
NVAVDNLVERLAGRGARLLRLGHPARLLQPIQQHSLDAVLARGDNAQIVADIRRDMDQAW
AKTKKAQDKGERSHFLSEIKTLRKELKEREEAAMATALSQASVVLATNTGASSDGPLKLL
PETHFDLVVIDECAQALEASCWIPLLKAPKCILAGDHKQLPPTIISHRAAAEGLSLSLME
RLAGHYGEQAVRMLTVQYRMHRDIMEWASSELYGGRLSAHPSVAQHLLRDLPGVSSTEET
SIPLLLIDTAGCGLFELEVEDEQSKGNPGEVQLVGMHVQALVDAGVKAKDIAVVAPYNLQ
VDMLRQHLCHSHPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEERRINVAVTRA
RRQVAVVCDSHTVGSRPFLRRLLDHLSQHGLVRSAFEYLDDLVPQNYPGEGCAQRQQGPK
TPGPKARPAPAGKLKAAAAGAGSQKPGTRSSPSAAGAGRDGSGSKEGGDKFRAMLAAFLV
SSEVQLDFPASLNSHERMLVHVLAEEYGLQHLSSGEGRDRYISVRKRLPKQPPLPSEPPL
PSEPPLPSEPLPEPQHPSGNTPDLAEPEEVNKGSGKVDLKSLHLERVQREKARREEAARK
VQEPSRGSRKKDKSEAKGKPVIGSAAGEDFDALIAAAIKADRTCGFPRCKASVTTLGQLC
HHCQRLFCLSHHIPEVHGCGEKAKAHARQRISREGVLYPGSGSKDKSLDPTKRAHLQRRL
DKKLSELTSQRKGKKKDKEK
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgaggcggcggagcggcacctggagctgctgcgggacgagcgggaggccgag
ttggaacagagcagggcatggcaggagagcgtctccctgaaggaattgcagcggaggggc
gtctgcttgctcaagctccaggtcaccagccagagaaccggcctctacgggcgtctcctc
gtgacattccagcccaggaagtgggattcggacgccgaactgccctccaacagctttggg
cctggggacatcgtggggctctatgagtcagctgggcagggggacccgctgtgcacgggc
gtggtgacacgtgtcacccccaaggcagtgacggtggccctggaagagccccgggatggg
gagctggccgtggaccacgagcgctccttccgcctgctcaagctggccaacgacgtcacc
tacaacaggctcaaaagagctttaactgcactcaagcagtaccgtggtggcccagcctct
gacctgatcgatgtcctcttctttgcctctgctcccagggcattccctgaaacaaaacct
ctggagttcttcaatgcctccctggatgagtctcagcaggaagctgtgtccttctcattg
gctcagagggagcttgccatcatccacgggcctcccggcacagggaaaaccacgaccctg
gtggagatcatcctgcaggctgtgcagcagggcctgaaggtactgtgctgtgccccgtcc
aacgtggctgtggataatctggtggagcggctggccggccgcggggcgcggctgctgcgg
ctgggccaccccgcccgcctgctgcagcccatccagcagcactccctggacgccgtgctg
gcccgaggggacaacgcccagatcgtggctgacatcaggagggacatggaccaggcatgg
gcaaaaaccaaaaaggcccaagacaagggagagcgaagccattttctgagtgagattaaa
accctgaggaaggagctgaaggagcgggaagaggctgccatggctacagccctcagccag
gccagcgttgtccttgccaccaacacaggtgcttcctcagacggccccctgaagctgctg
cctgaaacccactttgacctggtggtgattgatgagtgtgcccaggctctggaagccagc
tgttggatccctctgctgaaggctcccaagtgcatcctggcgggggatcacaagcagctg
ccccccaccatcatctcccacagggctgcagctgaggggctgtccctgagcctgatggag
cggctggccgggcactacggggagcaggcggtgcggatgctgacggtgcagtaccgcatg
caccgggacatcatggaatgggcgtcctcggagctctacggcggccggctcagcgctcac
ccctccgtggcacagcacctgctcagggacctgccgggcgtctcctccacagaagagacc
agcattcccttgttgctcatagacaccgctggctgtggcctgtttgagctggaagtggag
gatgaacagtccaaggggaatccaggggaggtccagctggtggggatgcacgtccaggcc
ttggtggacgctggtgtgaaggccaaggacatcgctgtggtggccccctacaacctccag
gtggacatgctccgacagcacctttgccacagccaccccgagctggaaattaaatcagtg
gatggtttccaaggaagggagaaggaggcagtgatcctgtcctttgtcagatccaacagg
aaaggtgaggtgggcttcctggccgaggagcggcggatcaacgtggcggtgacgcgggca
cggcgccaggtggccgtggtgtgtgacagccacaccgtgggaagccgccccttcctgcgg
cgcctcctggaccacctgtcccagcacggcctcgtgcgctccgccttcgagtacctggat
gacctcgtgccccaaaactaccccggggagggctgtgcccagcgccagcagggccccaaa
acaccgggccccaaagcgaggccagctccggctgggaagctcaaggcggcagcagccgga
gcagggagccagaaaccgggaacacggagctccccgagcgctgccggagctgggagagat
ggctcagggtcaaaggagggtggggacaagttcagggccatgctggcggccttcctggtg
agcagcgaggtgcagctggatttcccggcatccctgaattcccacgagcggatgctggtt
cacgtgctggccgaggagtacgggctgcagcacctgagctccggggagggccgggacagg
tacatcagcgtccgcaagagactccccaagcagcccccacttccctctgagcccccgctg
ccctccgagcccccgctgccctccgagccccttcctgagccccagcatcccagcgggaac
acccctgaccttgcggagccagaggaagtcaacaagggctcagggaaagtggacctgaaa
tccctgcacctggagagagtccagagggagaaagccaggcgggaggaggcagcgaggaag
gtgcaggagcccagccgtggcagcaggaaaaaggacaagagcgaagccaaaggaaaaccg
gtgatcgggagcgcagccggagaggattttgacgctctgattgccgctgccatcaaagct
gacaggacctgtggcttcccccgttgcaaggcctctgtcaccaccctgggccagctctgc
caccactgccagcggctcttctgcctcagccaccacatccccgaggtccacggctgtggg
gagaaggccaaggcccacgcacggcagcggatcagccgggaaggggtcctgtatcccggg
agtggctccaaggacaaatccctggatcccaccaagcgagcccacctccagcggcgcctg
gacaagaagctcagtgagctgacgagccagaggaagggcaaaaagaaagacaaagagaaa
tga
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