Parus major (Great Tit): 107206142
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Entry
107206142 CDS
T04864
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
pmaj
Parus major (Great Tit)
Pathway
pmaj04140
Autophagy - animal
pmaj04148
Efferocytosis
pmaj05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
107206142 (VPS39)
04148 Efferocytosis
107206142 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
107206142 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pmaj04131
]
107206142 (VPS39)
Membrane trafficking [BR:
pmaj04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
107206142 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
SAM_CEP-1_C
EcoR124_C
DUF4145
Motif
Other DBs
NCBI-GeneID:
107206142
NCBI-ProteinID:
XP_015487139
Ensembl:
ENSPMJG00000014782
LinkDB
All DBs
Position
5:complement(25722669..25745285)
Genome browser
AA seq
835 aa
AA seq
DB search
MSSESVCCNRFEVTLEKSNKNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTI
SKAKGASLFTCDLQQSDTGEEVLRMCVAVRKKLQLYFWKDREFHELQGDFSVPDVPKSMA
WCENSICVGFKRDYYLIRVDGKGSIKELFPTGKQLEPLVAPVADGKVAVGQDDLTVVLNE
EGVCTQKCALNWTDIPIAMEHQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGG
TNIIYVASNHFVWRLIPVSIATQIQQLLQDKQFELALQLAEMKDDSDSEKRQQIHHIKNL
FAFNLFCQKRFDESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPGLSGAELEK
AHLALIDYLTQKRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHT
NVALVAPLLRLENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANS
PLKGHERTVQYLQHLGTENLHLVFSYSVWVLRDFPEDGLKIFTEDLPEVEALPRDKVLSF
LIENFKSLTIPYLEHIIHVWEETGADFHNCLIQLYCEKVQGLMKEYLSSFPADRAPVPAG
EEGGDLGDYRKKLLLFLEKSSWYEPSRLISDFPFDGLLEERALLLGRMGKHEQALFIYVH
ILKDTNMAENYCHKHYDRNKDGNKDVYLSLLRMYLSPPSVHCLGPIKMEVLEPQANLQAA
LQVLELHHSKLDTTKAINLLPANTQISEIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLR
VQEERILHQQVKCIITEEKVCTVCKKKIGNSAFARYPNAIVVHYFCSKEVNTLDT
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcagaaagtgtctgttgcaataggtttgaagtgacactagagaaatcaaataag
aacttctcaaagaagattcaacagattcacgttgtttctcaatttaagattttggtcagt
ctactagaaaataacatttacgtccatgacctgttgacatttcaacaaatcaccacaatt
tcaaaggcaaaaggtgcatctctcttcacttgtgatctccagcaatcagatacaggggaa
gaggtgctgaggatgtgtgtggcagtgcgtaagaagctacagctttatttctggaaggac
agagagttccatgagctgcagggagacttcagtgtacctgatgtacccaaatctatggcc
tggtgtgaaaactccatctgtgtaggcttcaagagggactattacctgatacgggtggat
ggaaaaggatccatcaaagaactgtttcccacagggaagcagctggaaccattggtagct
cctgtagcagatggaaaagttgcagttggccaagatgatctaacagttgtgcttaatgaa
gaaggggtctgtactcagaagtgtgccttgaactggacagatattcctatagccatggaa
caccagcctccctacatcattgctgttctgccaaggtacgtggagatccgcacttttgaa
ccccggctgctggtgcagagcatcgagctgcagaggccacgcttcatcacctctggaggc
acaaacatcatatatgtggcaagtaatcattttgtttggaggcttattccggtgtccata
gccacacagatccagcagcttctgcaggacaaacagtttgagttggctttgcagttggca
gaaatgaaagatgattcagatagtgagaagcgacaacaaattcaccacataaagaacctc
tttgccttcaaccttttctgccagaagcgttttgatgaatccatgcaagtttttgccaag
cttggtacagatcccactcatgtgatgggtctgtatccggacctcctgcccacagattac
aggaagcagctacaatatcccaaccccctcccagggctctctggggcagagctggagaag
gcacatttagctctgatagactacctaactcaaaaaaggagtcagctagtgaagaagctg
aatgattctgatcatcagtccagtacctcacccctcatggaaggaacacccacgatcaaa
tccaaaaagaagctgctacaaatcattgataccaccctgttaaagtgttacctgcataca
aatgtagcactggtggcaccgctgctacgtctggagaacaatcactgccatattgaggag
agtgagcatgtactaaagaaggcacacaaatacagtgagctgataatactgtatgagaaa
aaaggtctgcatgagaaagcattacaggtactggtggatcagtcaaagaaagccaactca
cctttgaagggtcatgagaggacagtgcaatatctgcagcatttgggcacagagaacttg
cacttggtattttcctactctgtctgggtgctaagagattttcctgaagatggactgaag
atatttacagaagacctccctgaagtggaagctttgccacgagacaaagtgctcagtttc
ttgatagaaaattttaaaagcttgactattccttacctggaacacatcattcatgtctgg
gaagaaaccggtgcggactttcacaactgtctgatccagctgtactgtgagaaagtgcag
ggtttaatgaaagagtatctcagttctttccctgcagatagagctccggtgcctgctggg
gaggaaggaggagatttgggggattaccggaaaaagctgctgctttttttggagaagtct
agctggtatgaacctagtcgacttattagtgacttcccttttgatggtctcctagaagaa
cgtgctctgctcttgggtcgtatggggaagcatgagcaagctctgtttatttatgttcat
attttgaaggacaccaacatggctgaaaactactgccataaacattatgacagaaacaaa
gatggcaacaaagatgtgtatctgtccctgctccgcatgtatctctccccacccagtgtt
cattgcctgggaccgatcaagatggaggtgctggagcctcaagccaatctgcaggctgct
ctgcaggttttggagctgcaccacagcaaactggataccactaaggcaataaacctgctc
ccagcaaatacacagattagtgagattcgcatcttcttagagaaagtacttgaagaaaat
gctcagaagaaaagatttaatcaagtgctcaagaatcttctccatgcagagtttctgagg
gtccaggaggagcggatcttgcatcagcaagtgaagtgcattattacagaggagaaggtg
tgcactgtttgtaaaaagaagataggtaacagtgcatttgctcgataccctaatgcaata
gtcgtgcattatttctgctccaaagaagtcaatacactggacacctga
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