Parus major (Great Tit): 107206756
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Entry
107206756 CDS
T04864
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
pmaj
Parus major (Great Tit)
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pmaj00536
]
107206756 (COL13A1)
Glycosaminoglycan binding proteins [BR:
pmaj00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107206756 (COL13A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
107206756
NCBI-ProteinID:
XP_033371375
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All DBs
Position
6:872654..965130
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AA seq
787 aa
AA seq
DB search
MLEEKSWKGVDEAVFDRGCVAPPRSGDGERCCRLPLLLGSGLPGVSLLSLVLSLLLYFRT
SDLQSRVSHLEADRPTQLPAWLSADQMETAILGRVDQLLNEKLKFHLPRHREVRDTHQRC
NCPAGPPGDKGAMGIPGRPGLKGQSGEKGAPGEAGMSIIGPRGPPGQPGTRGFPGFPGPI
GLDGKPGHPGQKGEMGAAGPRGQPGPPGQKGEKGQCAEYPHRLLPLLNSVRLAPPPVIKR
RTFQGEQGQAGIQGPPGPPGPPGPAGPAGPEGIPGHPGPIGPPGRAGEPGKPGRDGKGLP
GPPGPKGDAGIQGYPGRKGEVGESGLPGARGLPGASGPKGEKGDAGIKGAPGMAAAGMKG
EPGTPGEKGDSGVPGRMGPPGLPGKRGQRGEKGRAGDPGLPGLPGPKGEKGIAENALVGA
KGEPGPPGLPGPPGPKGEAGDVGQPGAAGSQGEKGERGSPGDQGPMGPRGPKGEPGKDEM
MDYDGNISEALQEIRTLALMGPPGRPGVAGPPGPPGQKGEIGLPGPPGHDGEKGPRGKPG
EMGPPGPHGLPGKDGPPGIKGEPGNIGVRGEKGDKGEPGQAGSPGLDGPTGEKGERGDQG
IPGPSGLPGPIGLPGLTGEKGEPGERGDKGDPGESISGPPGPQGPPGPPGLQGIPGPKGE
AGIDGVKGEKGAQGEKGDRGPLGLPGASGLDGRPGPPGIPGPVGVSGPAGPKGERGSKGD
PGVAGPMGPAGLPGLQGLPGDKGVRGERGKKGSRGSKGDKGDQGAPGLDAPCPLGEDGLP
VQGCWNK
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgttggaggagaagagctggaaaggcgtcgacgaagcagtttttgacagggggtgtgtg
gctccccccaggagcggcgatggggagagatgctgccgcctccctctcctgctgggctcg
gggctgcccggcgtctccctgctctctctggtgctgagcctcctgctgtactttcggacc
tccgatctgcagtcccgggtgtcccacttggaagcggacagacccacacagctccctgcc
tggctctcagcagaccaaatggagacagctattttgggaagagttgaccaactgctcaat
gagaaattaaagttccacttgccaagacatcgagaagttcgagacacacaccagcgatgc
aactgcccggcaggtccgcctggggacaaaggtgcgatgggaatccctgggcggccggga
ctaaaagggcaatccggagagaagggtgctccaggagaagctggcatgtctatcatcggg
ccccgcggtccacccggacagcctggaacaagaggttttcctggattcccgggccctatt
ggcttggatggcaaaccgggccatcctggacagaagggagagatgggtgctgcaggtccc
aggggacaacctggacccccaggacaaaaaggagagaagggtcagtgtgcagagtacccg
cacaggctgttgcctctcctcaattcagtgcgcctggctccacctccggtcataaagaga
cgcactttccagggtgaacaaggacaagcggggatccaaggtccgccagggccccctggt
ccgccagggcccgctggaccagccggacccgaaggaatcccaggacatcctgggccaatc
ggaccccctggcagagcaggagaacctggaaaacctggcagagatggaaagggcttacct
gggcctcctggaccaaagggagacgctgggattcagggataccctggcagaaagggtgag
gtgggcgagtcaggcctgcccggtgcccgcggcctccctggagcctcaggccccaagggt
gaaaaaggggatgctggcataaagggtgctcctgggatggctgccgcagggatgaagggc
gagcctgggactccaggagaaaagggagattctggagtcccagggaggatgggcccccca
ggtttgccagggaagagggggcagcggggtgagaagggacgagctggagaccctgggctt
cctggacttcctggcccaaagggagagaagggaattgctgagaatgctttggtgggagct
aaaggagaacctggccctccaggtctgcctggaccccctggaccaaagggagaagctggt
gatgttggtcagcctggtgctgcaggatcacagggagaaaagggggaacgtggctcaccg
ggagaccagggacccatgggcccaaggggccccaaaggagagcctgggaaggatgaaatg
atggactatgatgggaacatcagtgaagctctccaggaaataagaactttggccttgatg
ggacccccaggacgtccaggtgtggctggacctccagggccaccaggacagaagggtgag
attggcttgccaggtcctccaggccacgatggagaaaagggaccacgtggcaagcctgga
gaaatgggtccccctggccctcatgggctgccaggaaaggatggacctcctggaataaag
ggagagccaggcaacatcggggtcagaggagaaaagggcgataagggagagccaggacaa
gcaggctcaccgggtctagatggccccactggagagaagggcgaacgaggtgaccaaggg
ataccaggaccatcaggattgccagggcccattggacttccaggactgacaggagagaag
ggtgagcctggggagcgtggagacaaaggagatccaggagaatcgatatctgggccccct
ggaccccaaggccctccaggacctccgggtcttcagggcattcccggacccaagggggaa
gcagggattgatggagtgaaaggagagaagggtgcccagggtgaaaaaggagacagaggg
ccactgggattacccggtgcttcaggtttagacggcaggcctggaccaccgggtattcca
ggaccagttggggtttcgggaccagcaggaccaaaaggagaaaggggcagtaaaggagat
cctggagttgcaggaccaatggggccagcagggcttcctggtttacaaggtctacctggt
gacaagggagtccggggggagaggggcaagaaaggctctagagggtctaaaggggataag
ggagaccaaggagcacctggattagatgcaccctgtccgttgggggaagatggccttcca
gttcaaggctgctggaataagtga
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