Parus major (Great Tit): 107206859
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Entry
107206859 CDS
T04864
Symbol
TAF5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
pmaj
Parus major (Great Tit)
Pathway
pmaj03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107206859 (TAF5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmaj03021
]
107206859 (TAF5)
03036 Chromosome and associated proteins [BR:
pmaj03036
]
107206859 (TAF5)
Transcription machinery [BR:
pmaj03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
107206859 (TAF5)
Coactivators
SAGA/TFTC/STAGA complex
107206859 (TAF5)
Chromosome and associated proteins [BR:
pmaj03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
107206859 (TAF5)
STAGA complex
107206859 (TAF5)
TFTC complex
107206859 (TAF5)
SAGA complex
107206859 (TAF5)
SLIK complex
107206859 (TAF5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
TFIID_NTD2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_DCAF12
Beta-prop_SPT8
WD_LRWD1
Beta-prop_Nup120_160
PEP5_VPS11_N
CDK5RAP3
WD40_like
RAB3GAP2_N
eIF2A
VID27
Motif
Other DBs
NCBI-GeneID:
107206859
NCBI-ProteinID:
XP_015488715
Ensembl:
ENSPMJG00000004873
LinkDB
All DBs
Position
6:22092233..22102431
Genome browser
AA seq
783 aa
AA seq
DB search
MAALHEEPAEVAAVQPDPEAGTPPPPPAVPPAAAPAAAPAAAAEGEAAGASGDAAPPKPA
APGPAASPAALDRQTLVAVLQFLRRSNLRESEEILRREARLLGDDLGAVALSPASAGLLG
GSGSDADSGEALLGRGTSAAAVAIGGNVATVATSSPGVAAVAAVPPGKVGGAVVVEDQPD
VSAVLSAYNQQGDPTLYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHE
SEAKSFFERFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLL
KRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGEAKREANKAKVFFGLL
KEPEFDVPLDDEDEEGENEEGKPKKKKPKKDNVGSKSKKQDPNAPPQNRIPLPELKDSDK
LDKVMNMKEAARRVRLGPECLPSICFYTFLNAYQGLTAVDITDDSSMIVGGFADSTVRVW
SVTPKKLRSVKTAADLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGTSFSPDRNY
LLSCSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHY
QPLRIFAGHLADVTCTRFHPNSNYIATGSADRTIRLWDVLNGNCVRIFTGHKGPIHSLAF
SPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTIYALRFSRDGEILASGSMDNTVRL
WDAVKAFEDLETDDFTTATGHINLPENSQDLLLGTYMTKSTPVVHLHFTRRNLLLAAGAY
SSQ
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgctgcatgaggagccggcagaagtggcggcggtgcagccggaccccgaggcg
gggacgccgccgccgccgcccgcggtgcctcccgccgccgctcccgccgccgccccggcc
gccgcggcggaaggagaggctgcgggagccagtggggatgctgcacccccgaagcccgcg
gcgccgggcccggccgcctccccggcggcgttggaccggcagacgcttgtggccgtactg
cagttcctgcggcgcagcaacctccgcgagtccgaggagatcctacgtcgcgaagcccgc
ttgctcggcgacgacctgggtgctgtcgccctcagccccgccagcgccgggctcctgggg
ggctccggcagcgatgcggactccggcgaggcgctgctcggccggggcaccagcgctgcc
gccgtcgccatagggggaaacgtcgccactgtcgctacttccagccccggcgtggctgca
gttgccgccgtgccgccggggaaagtcggaggcgcggtggttgtggaggatcagccagac
gtgagcgcggtgctgtcagcctacaaccagcaaggagacccgacgctgtatgaggagtac
tacagcggattgaaacacttcatcgagtgctccctggactgtcatcgggcagaattgtct
cagctcttttatcctctctttgtgcacatgtatttggaattggtctacaatcaacatgag
agtgaggcaaagtctttttttgaaagatttcatggggatcaggagtgctattaccaggat
gacctgcgtgtattgtcgagcttaaccaaaaaggaacacatgaaaggtaacgagaccatg
ctggatttccgaacaagcaagtttgtgctgcgcatttcccgtgactcttaccaactcctg
aagaggcatcttcaggaaaagcagaacaatcagatctggaacattgttcaggagcatctt
tacattgacatctttgatggaatgcctcgcagtaaacaacagatagatgctatggttgga
agcttggctggtgaggcaaaacgagaggctaataaagcaaaggttttctttggcttgttg
aaagaaccagagtttgatgtgcctttggatgatgaagatgaagaaggagaaaatgaggaa
ggaaagccaaagaagaaaaaacctaagaaagataatgtagggtcaaaaagtaaaaaacag
gatcctaacgctcctccccaaaacagaattcctctgccagaactgaaagactctgacaag
ctggataaagtaatgaatatgaaggaagctgcaagacgagtgcgtcttggaccagagtgc
ctgccctccatctgtttctacacattccttaatgcttatcagggtctaactgcagtggat
attacagatgactccagcatgattgtaggaggctttgctgactccactgtcagagtgtgg
tctgtgactccaaaaaagctacgtagtgtgaaaacagctgcagacctcagtctcattgac
aaagaatcagatgatgtcttggagaggatcatggatgagaaaacagcaagtgagttgaag
attttgtatggtcacagtggacctgtctatggcaccagcttcagtcctgataggaattat
ctattgtcttgttctgaggatggcaccgtgagattgtggagtctccaaacattcacatgt
ttggtgggatataaaggacacaactatcctgtttgggatacacagttctctccttatggc
tattactttgtttctgggggacatgacagagtggctcgtctgtgggcaacagatcactac
cagccattacggatctttgctggccatcttgcagatgtgacatgtacccgatttcatcca
aactccaactatattgctacaggctcagcagacaggactataaggctctgggatgttttg
aatgggaattgtgtaagaatattcactggacataagggaccaattcattcattggcattt
tctcctaatggacgattcctggctactggagcaacagatggaagagttctgctgtgggat
attggacatggcttgatggttggcgaattgaaagggcacactgacactatctacgccctc
agattcagtagggatggggagattttagcatcaggttcaatggataacacagttcgtctg
tgggatgctgtgaaggcttttgaagacttagaaaccgatgacttcactacagccactgga
cacataaatttgcctgaaaactcacaggacttgttactgggcacatacatgaccaaatca
accccggttgttcatctccatttcacacgcaggaacctgctgctggctgcgggagcctac
agctcacagtag
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integrated database retrieval system
