Parus major (Great Tit): 107206978 Help Entry 107206978         CDS       T04864                                  Symbol CDH23 Name (RefSeq) cadherin-23 isoform X1   KO K06813   cadherin 23 Organism pmaj  Parus major (Great Tit) Brite KEGG Orthology (KO) [BR:pmaj00001]  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    03037 Cilium and associated proteins [BR:pmaj03037]     107206978 (CDH23)    04515 Cell adhesion molecules [BR:pmaj04515]     107206978 (CDH23) Cilium and associated proteins [BR:pmaj03037]  Primary cilia and associated proteins   USH complex and associated proteins    107206978 (CDH23) Cell adhesion molecules [BR:pmaj04515]  Cadherins   Major cadherins    107206978 (CDH23) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Cadherin Cadherin_FAT4_N Cadherin_CELSR2_9th Fibulin_C PCDH15_12th Motif Other DBs NCBI-GeneID:  107206978 NCBI-ProteinID:  XP_015489015 Ensembl:  ENSPMJG00000014163 LinkDB All DBs Position 6:complement(1057238..1233367) Genome browser AA seq 3322 aa AA seqDB search MKRRVAAAGSFLPLLLLLELVSPGQGNRLPYFINYFFDTYLLINEDTPVGSSVTQLLARD LDNDPLVFGVVGEEASRFFAVESVTGVVWLRQPLDRETKSEFTVEFSVSDSQGVIKGTVN IQVGDVNDNAPQFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSNFFA IDSGRGIVSVIRELDYEVTQAYQLQVNATDQDKNKPLSTLANLAIIITDVQDMDPIFINL PYSTNIYENSPPGTTVRMITAVDQDKGRPRGIGYTIVSGNTNSIFALDYISGALTLNGPL DRENPFYSSGFILTVKGTELNDDRTPSNASVTTTFNILVIDVNDNAPEFNSSEYSVSIPE LAQVGFALPLFIQVQDKDEGPNSVFEVYLVGNNSNHFIISPTSIQGKADIRVRVAVPLDF ETIPRYEFSLFANESVPDHVGFARVKINLINENDNRPVFSKALYNVSLLENTTVGTTVLQ VHATDNDVGSYGKVSYFFSDDPDRFSLDKDTGVIILTARLDFETMQRYTLTVIARDGGGE ETTGRVRINVLDVNDNVPTFQKEAYLGALRENEPSVTQVVRLRASDEDSPPNNQISYSIV QASAFRDYFDITVSEGYGVISVNHPLDYEQLANGVIYLTVMAKDAGNPPLNSTVPVTIEV FDENDNPPTFSKPSYVIAIMEDIMAGATVLFLNATDMDKSREYGQESIIYSLEGSSHFRI NARSGEITTTSLLDREAKSEYILIVRAVDGGVGHHQKTGIAMVNITLLDINDNYPTWKDE PYFINLVEMTPPNSDVTTVVAVDPDLGENGTVVYSIRPPNKFYTLNSTTGKIRTSGVLLD RENPNPQEAQLMRRIVVSVTDCGRPPLRATSSATVFVNLLDLNDNDPTFQNLPSVAEIAE GLPAGSSVFQVVAIDLDEGPNGQVSYRMQVGMPRMDFLINSTGGLVTSTAVLDRERIPEY FLRVVASDAGTPAKSSTSTLTVKVLDVNDENPTFFPSVYNVSLPEDVARDFKVVRLNCTD ADIGLNAELSYFITGGNQDGKFSVGFRDGVVRTVVSLDRETVASYTLILEAIDNGPTGNR RTGTATVYVTVLDVNDNRPIFLQSSYEVSVPEDIPAASSIVQVKATDADEGINGRVWYRI VKGNEHNHFRINPSTGLVMRGVRHLDREQNSSHVLEVEAYNTEQGPMRSSVRVIVYVEDV NDEVPVFTQRQYNRLGLRETAGIGTSVAVVRATDRDTGKGGLVSYKIVSGAEGKFEIDES TGLITTIEYLDYETKTSYLMNVSATDQAPPNNQGFCSVYVSLLNELDEAVQFSNSSYEAV IMENIPLGSEVLRVQARSIDNLNQITYKFDPNTNPQALSLFKINGVTGVITVKGQVDREK GDFYTMTVVADDGGPKIDSTVKVTITVLDENDNSPQFDITSDSSVSVAEDIAVGKRVALV LARDPDAGRNGQVTFSLTSGNIGRAFEIRTTNNTYGEVFVARPLDRELLDHYTLRIQASD GGVPPRRKEHILRVNILDVNDNPPVIDSPFGYNVSISENVGGGTAVAQVRATDRDIGLNS VLSYYITRGNEDLTFRMDRVTGEIATRPSPPDRERQSFYSLVVTVEDEGNPSLSATTMVY VTILDENDNAPTFRQQLYEVTLDEGPSTLNATLVTVQALDQDEGPNGTVAYAITEGNILG TFHIDNATGEIRTVKELDYEISHGRYTLIVTATDQCPIVSRRLTSTATVLVNLNDINDNC PTFPRPYEGPFDVTEGQPGPRVWTFLAHDGDSGPNGQVEYSIIAGDPLGEFVISPVEGEL RVRKDIELDRENIPFYNLTIAARDRGVPPLSSTMLVGVRVLDINDNDPVLLNLPMNLTLS ENAAVSSFVTRVLARDADQGPNALLTFDITAGNTENAFYINSTSGVVYVNRPLDRERVAE YRLTITVKDNPENIRNARRDFDLLVISIADENDNRPLFTQGSYQAEVMENSAPGTPVTML NGPILALDADQGSNAVVTYELLKASPDLFVINNKTGVVSVKPGAVIDREALLDPHLEFTL VARDVGGLNSTASLAVTILDDNDNRPVFQPASITARLLENSPPGFSVLQVTATDADSGLN QQLDYRIEGGGQDRFLIDATTGVIRVANITIDREERDAYRLTVVAVDQGTPALSGTATVS IIIDDVNDCRPEFINPIQTVSIPESAPPGTVVAEVTAIDRDLHPRLEYYLLGIVARDDTD ALVPEQQGAFTVDFRTGAVKIKTPLNRELVATYEVTISVHDNASEVIDRSVSVPNAKLTV NVLDVNDNTPRFRPFGVTYFTERILEGATQGTTLISISAVDPDKGANGQITYELLNLSPE GYACLEDHSAGKVVANRTVDYEEVQWLNFTVRASDNGSPRRSAEIPVYLQIVDINDNNPV FSQPSYQKAVFEDVPLGTVILSVEATDADSGQFALIQYSLSDGEGKFGINPNTGDIYILS ALDREKKDHYTLTAVARDNPGDVSSNRRENSVQVLITVLDINDVRPQFSKSQFSTSVYEN EPAGTSVITMSATDLDEGDNGVVTYSIEGPGAEAFKINKDSGLVTSRRRLQSYERFNLTV VATDKGHPPLWGTTLLHIDVIDINDNRPVFVRPPNGTILHIKEEIPLRSNVYEVYATDKD EGLNGVVLYSLLKTGAGNKDWEYFTIDSVSGLIQTAMRLDREKQAVYNLIIVACDQGQPP YETMQPLQVALDDIDDNEPIFLRPPRDSPQYQALSVPEHSRPGTVVGNVTGAVDADEGSN AIVYYFIAAGNQESNFQLSREGKLKVMRDLDREKEPYHSIIVKASSQRNWAPPRGQQVGR AQLWDLSEDLTLQEVRIFLDDINDQSPQFTKSEYTAGVATDAKVGSELIRVLAVDADVGN NSLVLYSILGIRYIKQHSNDSEEVANIFSIGTLDGILRTFDLFTAYNPGYFVVDIMASDL VGHNDTAIVGIYILRDDQRVKIIINEIPDKVRQFEEEFISLLSNITGAIVNTDDVQFHVD KKGRVNFAQTELLIHVVNRETNRILDVERVIQMIDENKEQLRNLFRNYNVLDVQPAITAR APDDLSALQMAIIVLAVLLFLAAMLFILMNWYYRTVHKRKLKAIVAGSTGNRGFMDIMDM PNTNKYSFDGANPVWLDPFCRNMELAAQAEHEDDLPENLSEITDLWNSPARTHGTFGREP SAAKPEDDRYLRAAIQEYDNIAKLGQIMREGPIKLIQKELEDEEGERSPSQGSLRFRHKQ PVELKGPDGIHVVHGSTGTLLASDLNSLPEDDQKVLGRSLETLTADCGGYSDHNARTESA KSTPLHKMREVIMESPLEITEL NT seq 9969 nt NT seq  +upstreamnt  +downstreamnt atgaagcgtcgcgtggctgctgccggcagcttcctgcctctcctcctgctcctggagctg gtctctccaggccagggaaaccgcctgccgtacttcatcaactacttcttcgacacctac ctgctgatcaacgaggacacacctgtgggttcctcagtgactcagctgctggcccgggac ctggacaatgacccgctggtctttggggtggtcggggaggaggccagtcggttctttgcc gtggagagcgtcaccggtgtcgtgtggctccgccagcccctggaccgagagactaagtca gaattcacggttgaattttctgtcagtgacagccaaggggtgatcaaagggacagtcaac atccaggtcggagacgtgaacgacaacgccccacagttccacaaccagccctacagcgtc cgcatcccagagaatacccctgtgggcacgccaattttcatcgtgaacgccacggacccg gacctgggggcaggaggcagcgtgctttactccttccagcccccttccaacttctttgcc atcgacagcggccgcggcatcgtgtcggtgatccgggagctggactacgaagtcactcag gcctaccagctccaggtgaacgccacggaccaagataaaaacaagccgctgtctactctg gccaacctggcaatcatcatcacagatgtgcaggacatggaccccatcttcatcaacctg ccctacagcacaaacatctacgagaactcgcctccgggtaccaccgtgcggatgataaca gccgtggatcaggacaagggacgtccccggggcatcggctacaccatcgtctcgggtaac accaacagcatctttgcactggactacatcagcggagctttaaccctgaatgggcccctg gaccgggaaaatcccttctacagctctggattcatcctcacagtgaagggaacagagctg aacgatgaccgcactccctccaacgccagcgtcaccaccaccttcaacatcctggtcatt gacgtcaacgacaacgcgcccgagttcaacagctccgagtacagcgtgtccatcccagag ctggcccaggtgggctttgcccttcccctcttcatccaggtgcaggacaaggatgaggga cccaacagcgtttttgaggtttacctggtgggcaacaactccaaccacttcatcatctcg ccgacctccatccaggggaaggcggacatccgtgtccgcgtggcagtgccgctggacttc gagaccattcctcgctatgaattctcgctcttcgcaaacgagagcgtcccggaccatgtc ggctttgcgcgggtgaaaatcaacctcatcaacgagaacgacaaccggcccgtgttcagc aaggccctctacaacgtcagcctcttggagaacaccaccgtgggcaccactgtcctccag gtccatgcaactgacaatgatgtgggctcctatggaaaagtcagttatttcttcagcgat gaccctgaccgtttctccctggacaaggacacgggtgtgatcatcctgacagctcggctg gactttgagaccatgcagcgctacaccctgaccgtcatcgcccgggacggcggcggggag gagacgacggggcgcgtcaggatcaatgtcctcgatgtcaatgacaatgtccccaccttc cagaaggaggcttacctgggggccctgcgggagaatgagccctctgtcacccaggtggtc cggctccgggcatctgatgaggactcccctcccaacaaccagatctcctacagcatcgtg caggcctctgccttccgcgactactttgacatcacggtgtcagaagggtacggagtgatc agcgtgaaccaccccctggactacgagcagctggccaacggggtcatctacctgacggtg atggccaaggacgccggcaacccgccgctcaacagcaccgtccctgtcaccatcgaggtg tttgatgaaaatgacaatccccccacgttcagcaagccctcctacgtgatagccatcatg gaggacattatggcaggagccacagtgctgtttctcaatgccacggacatggacaagtcc agggagtatgggcaggagtcaatcatctactccctggaaggctcctcgcattttcgcatc aatgctcgctcaggagaaatcacaacaacatctttgctggaccgggaggccaaatccgag tacatcctcattgtccgggcggtggacggaggcgtggggcaccaccagaagacaggcatt gctatggtgaacatcacgctgctggacatcaatgacaactaccccacctggaaggacgag ccgtacttcattaacctggtggaaatgacgcccccaaactcggacgtcaccacggtggtg gctgtagacccagacctgggggagaacggcacggtggtgtacagcatccggcctcccaac aagttctacaccctcaacagcaccacgggcaagatccgcacctcgggcgtgctgctggac cgggagaatcccaacccccaggaggcccagctcatgcgcaggatcgtggtgtccgtcacc gactgtgggaggccacccctgagagccaccagcagcgccacagtttttgtcaacctgctg gacctgaacgacaatgaccccactttccaaaacctgccctctgttgccgagatcgccgag ggccttcccgcgggctcctctgtcttccaggtcgtggccatcgacctggacgagggcccc aacgggcaggtgtcgtaccgcatgcaggtgggcatgccccgcatggatttcctcatcaac agcactggcgggctggtcacctccacagccgtgctggacagggagaggatccccgagtac ttcctgcgggtggtggccagcgacgccggcacgcccgccaagagctccaccagcaccctc actgtcaaagttctggacgtgaacgatgagaaccccaccttcttcccctccgtctacaac gtgtccctgcccgaggacgtggcccgggatttcaaagtggtccggctcaactgcacggat gccgacatcgggctgaacgctgagctcagctacttcatcacaggtgggaaccaggatggc aaattcagcgtcggcttcagggacggggtggtcaggacagtcgtgagtctggacagggag accgtggcatcctacacgctgatcctggaggccatcgacaatggtcccaccgggaaccgg cgcaccgggactgccaccgtgtacgtgactgtcctggatgtcaacgacaacaggcccatc ttcctgcagagcagctatgaagtcagtgtccccgaggacatcccggctgccagcagcata gtgcaggtgaaagccaccgacgcggacgaaggcattaacgggagagtgtggtacaggatt gtcaagggaaacgagcacaaccacttccgcatcaatcccagcacggggctggtgatgcga ggtgtgcggcacctggacagggagcagaactcctcccacgtgctggaggtggaggcctac aacacggagcaggggcccatgaggagctccgtgcgggtgattgtgtacgtggaggacgtc aacgacgaggtgccagtgttcacccagcgccagtacaaccgcctggggctgcgggagacg gcgggaatagggacctcggtggcagtggtccgggccaccgaccgagacacagggaaaggg ggcctggtgagctacaaaatcgtgtcgggcgcagaagggaagttcgagatcgatgaaagc acgggcctcatcacgaccatagagtacctggactacgagaccaaaaccagctacctgatg aatgtctctgccacggaccaagcgccccccaacaaccagggcttctgcagcgtgtacgtc agcctgctgaacgagctggacgaggctgtgcagttctccaacagcagctacgaggccgtg atcatggagaacatccccctgggctccgaggtgctccgtgtccaggctcgctccatcgac aacctcaaccagatcacctacaagttcgaccccaacaccaacccccaagcgctctccctc ttcaaaatcaatggggtcacgggtgtgatcacggtcaaaggccaggtggaccgagagaaa ggggatttctacactatgacagtggtggctgatgatggaggaccgaagattgactccaca gtgaaggtgaccatcacggtcctggatgagaacgacaacagcccccagttcgacatcacc tctgactcgtctgtaagcgtggctgaggacatcgccgtgggcaagagggtggccctggtc ctggcccgagatccagatgcaggcaggaacggccaggtgactttctcgctgacgtcgggg aacatcggccgggcttttgagatccgtaccaccaacaacacctacggcgaggtgtttgtg gcgcggccgctggaccgggagctgctggaccactacaccttacggatccaagcgtcggat ggcggcgttcctccccggaggaaggagcacattctacgagtgaacatcctggatgtcaat gacaacccccctgtcatcgacagccccttcggctacaacgtgagcatcagcgagaacgtc ggcggcggcacggcggtggcccaggtgcgcgccaccgaccgcgacatcggcctcaacagc gtcctctcctactacatcacccgagggaacgaggacctgaccttccgcatggaccgtgtc accggcgagatcgccacccggccctccccgccggaccgcgagcgccagagcttctacagc ctcgtggtcaccgtggaggacgagggcaacccctccctgtcggccaccaccatggtgtac gtcaccatcctggacgagaacgacaacgctcccaccttccggcaacagctctacgaggtg accctcgacgaaggtccctccacactcaacgccaccctggtcaccgtgcaggccctggat caggatgagggacccaacggcacggtggcctacgccatcaccgaaggcaacatcttgggt accttccacattgacaacgccacgggggagatccgcacggtgaaggagctggactacgag atcagccacgggcgctacaccctgatcgtcaccgccaccgaccagtgccccatcgtctca cgtcgcctgacatcgaccgccacagtgctggtgaacctcaatgacatcaatgacaactgt cccaccttcccacggccctacgaggggcccttcgatgtcaccgaggggcagcccggccct cgagtctggactttcctggcccacgacggggactcaggacccaatggacaagtggaatac agcatcatcgccggggaccccctcggggaatttgtcatctccccggtggaaggagagctg cgggtgaggaaggacatcgagctggaccgcgagaacatccccttctacaacctcaccatc gctgcccgggaccggggggtgcctcccctcagctccaccatgctggtgggtgtccgtgtg ctggacatcaacgacaacgaccccgtgctcctgaacctcccgatgaacctcaccctgagc gagaacgccgccgtctccagcttcgtcacccgcgtcctcgcccgggacgcagaccagggc cccaacgccctcctgaccttcgatatcacagcagggaacacagagaatgccttctacatc aacagcaccagtggcgttgtgtacgtgaaccgcccgctggacagggagcgggtggccgag tacaggctgaccatcacggtgaaggacaaccccgagaacatacgcaatgccaggcgggat tttgacctgctggtcatttccatagcggatgagaacgacaaccgccccctcttcacccag ggctcctaccaggctgaggtgatggagaactcggcccctgggactccggtcacaatgctc aatggacccatcctagctctggatgctgaccagggcagcaatgccgtggtgacctacgag ctcctgaaggcatccccggacctctttgttatcaacaacaagacaggcgtggtttcggtg aagcctggtgccgtgatagaccgagaggctttgctggaccctcacctggaattcacgctg gtggctcgtgatgtgggggggctgaacagcactgccagcctggcagtgaccatcctggat gacaatgacaaccgccccgtcttccagccggcatccatcacggcacggctgttggagaac agccctccaggcttctccgtcctccaggtgacagccacagatgctgacagtggcctcaac caacagctggactaccgtattgagggtggtggccaggacaggttcctgattgatgccacc acgggggtgatccgcgtggccaacatcaccatcgaccgggaggagcgcgatgcctaccgg ctgacggtggtggccgtggaccagggcaccccggcgctctcgggcaccgccaccgtcagc atcatcatcgacgacgtcaacgactgccggcccgagttcatcaaccccatccagaccgtc agcatccccgagtcagctccccctggcaccgtggtggccgaggtgaccgccatcgacagg gacctccaccctcgcctggagtactacttgctggggatcgtggcccgcgacgacacagac gcgctggtgcccgaacagcaaggagcgttcacagtggattttaggacaggagctgtgaag atcaaaactcccctcaaccgtgagctagtggccacctatgaggtcaccatctctgtccac gacaatgccagcgaagtcatcgaccgctcggtcagcgtgcccaacgccaagctgacagtc aacgtcttggacgtcaacgacaacacacctcgcttccgccccttcggggtcacctatttc accgagcggatcctggagggagccacgcagggcaccacgctcatctccatctcagcagtg gacccagacaaaggtgccaatgggcagatcacctacgagctgctgaacctctctccggaa ggttacgcctgtctggaagaccattcggcagggaaggttgtggccaacaggacagtggac tatgaggaggtgcagtggctgaacttcaccgtccgcgcctccgacaacggctctccccgc agatccgctgagatccccgtgtacctccagatcgtggacatcaatgacaacaaccctgtt ttcagtcagccatcctaccagaaagctgtctttgaggacgtgccgctgggcacggtcatc ctgagcgtcgaggccaccgacgcagattccgggcagtttgctctcatccagtacagcctg agcgatggagagggcaagtttgggataaatcccaacacgggtgacatctacatcctgtca gccctggaccgggaaaagaaggatcactacacactgacagctgtggccagggacaaccct ggggatgtctccagtaaccgtcgggagaactctgtgcaggtgctgatcacagtcctggac atcaacgatgtcaggccccagttcagcaagagccagttcagcaccagtgtctatgagaat gagccagcagggacgtcagtgatcaccatgagcgccaccgacctggacgaaggggacaac ggcgtggtgacctacagcatcgagggtcctggagcggaggctttcaagatcaataaagac tccgggcttgtcacatcccggcggcgcctgcagtcctacgagaggttcaacctgactgtg gtggccacggacaaggggcacccccctctctgggggaccaccctgctccacatcgatgtc atcgacatcaatgacaaccgccccgtctttgtccgcccgcccaacggcaccatcctgcac atcaaggaggagatccccctgcggtccaacgtctacgaggtctatgccacggacaaagac gagggtctcaatggagtggtgctctacagcctgctgaaaacaggggcggggaacaaggac tgggagtacttcaccatcgactctgtcagcgggctgatccagacggccatgcggctggac cgggagaagcaggcggtgtacaacctgatcatcgtggcctgtgaccagggccagccaccc tacgagaccatgcagcccctccaggtagcgctcgatgacatcgatgacaatgaacccatc ttcctcaggccacctagggatagtccccagtaccaggcactctctgtccccgagcactcg cggccaggcaccgtggtggggaacgtcaccggcgcggtggacgcggatgagggctccaac gccatcgtatactacttcatagcagctgggaaccaggagagcaacttccagctgagccga gaagggaagctgaaggtcatgcgagacctggaccgggagaaggagccgtaccactccatc atcgtcaaagcatccagccagaggaactgggctcctccccgaggccagcaggtgggaaga gcccagctctgggacctcagcgaggacctgacccttcaggaggtgcggatcttcctggac gacatcaacgaccagtccccccagttcaccaagtcggagtacacggcgggggttgccact gatgccaaggtggggtcggagctgatcagagtgctcgccgtggatgccgatgtgggcaat aacagcctggtgctgtacagcatcctgggcatccgctacatcaagcagcactccaatgac tccgaggaggtggccaacatcttcagcatcggaacccttgatggcatcctgcgaaccttt gacctcttcacggcctataaccccggctactttgtggtggacatcatggcctctgacctg gtgggccacaatgacacggccattgtggggatttacatcctgcgggatgaccagcgagtc aaaatcatcatcaacgagatccctgacaaggtcaggcagttcgaggaggagttcatcagc ctgctctccaacatcacgggcgccatcgtcaacacggatgacgtgcagttccacgttgac aagaaaggccgggtgaactttgcccagacggagctgctgatccacgtggtgaacagggag accaaccgcatcctggacgtggagcgggttattcagatgatagacgagaacaaggagcag ctgaggaatctcttcaggaactacaacgtgctggacgtgcagcctgccattactgcccgg gcaccagacgacctctcggctctgcagatggcaatcatcgtgctggccgtcctgctcttc ctggctgccatgctcttcatcctcatgaactggtactaccggacagtgcacaaaaggaaa ctgaaagccatcgtggctggctccactgggaacagaggcttcatggacatcatggacatg ccaaacaccaacaagtactcctttgacggggccaacccggtgtggctggaccccttctgc aggaacatggagctggcggcgcaggcggagcatgaggacgacctgccggagaacctgagc gagatcaccgacctctggaacagccctgcccgcacccacggcaccttcgggagagagccc tccgccgccaagcccgaggatgaccgctacctgcgggcagccatccaggagtacgacaac atcgccaagctggggcagatcatgcgggagggacccatcaagctgatccagaaggagctg gaggacgaggagggggagcgcagccccagccagggcagcctgcgcttccgacacaagcag ccggtggagctgaagggtcccgacggcatccacgtggtgcacggcagcacgggcacgctg ctggcctccgacctcaacagcctgcccgaggacgaccagaaggtgctgggtcgctcgctg gagactctgaccgccgactgcgggggctacagcgaccacaacgcccgcaccgagtcggcc aagtccacccccctgcacaagatgcgggaggtgatcatggagagccctctggagatcacc gagttatga

DBGET integrated database retrieval system