Parus major (Great Tit): 107207254
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Entry
107207254 CDS
T04864
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A
KO
K12821
pre-mRNA-processing factor 40
Organism
pmaj
Parus major (Great Tit)
Pathway
pmaj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107207254 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmaj03041
]
107207254 (PRPF40A)
Spliceosome [BR:
pmaj03041
]
Complex A
U1 snRNP components
U1 related factors
107207254 (PRPF40A)
Complex B
107207254 (PRPF40A)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
DUF5409
Motif
Other DBs
NCBI-GeneID:
107207254
NCBI-ProteinID:
XP_015489505
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Position
7:complement(36457333..36476747)
Genome browser
AA seq
885 aa
AA seq
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MRPGGVDRGSLMMGHPGMPHYPPMGMHPMGQRPPNMPPVPHGMMPQMMPPMGGPPMGQMP
GMMQSVMPGMMMSHMSQAAMQPTVPPGVNSMDAQVGVTPPGTQTTHPVVSTVQQSSTTTS
SASEDHSKQKSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSD
SGKPYYYNSQTKESRWAKPKELEDLEAMIKAEENRYIFNIMLIFCLRAFKPFLRAFKPFL
RAFKPFLRKFKPFCCGPSQPFLGSFNPFSCAAPGTQDGSADTAAAHTEEAAKQDGSGDAA
AKKEDEEAQPVKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAK
LSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEM
EVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYCTTWSEA
QQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRES
FQLFLDELHEHGQLHSMSSWMELYPAISSDIRFTSMLGQPGSTALDLFKFYVEDLKARYH
DEKKIIKDILKDKGFVVEVNTSFEDFVTVISSTKRATTLDAGNIKLAFNSLLEKAEARER
EREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDIRDRFVKEPAFEDITLESERKRIF
KDFLHVLEHECQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEDDDSHSKKKRQRSESRSV
SERSSSAESERSYKKSKKHKKKSKKRRHKSDSPESDVEREKDKKERERDSEKERARQRSE
SKHKSPTKKRPGKDSGNWDTSGSELSEGELEKQRRTLLEQLDEDQ
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgcggcccggcggcgtcgaccgcggctccctcatgatgggacaccctggaatgccgcac
tacccccccatggggatgcaccccatgggacagagaccccccaacatgcccccagttccc
catgggatgatgcctcagatgatgccccccatgggaggacccccaatggggcagatgcct
ggaatgatgcagtcggtgatgcctggaatgatgatgtcccacatgtcccaggctgccatg
cagcccacggttcctccgggagtgaacagcatggacgcacaagtaggtgtgacccctcct
ggaactcagacgacgcatcccgtggtctccacagtccagcaaagctccaccaccaccagc
tctgccagcgaggaccactccaagcagaaatccacgtggacggagcacaaatccccggat
ggaagaacttattactacaacactgagaccaagcagtccacgtgggagaaaccagatgac
ctcaaaacccctgctgagcaattgttatccaagtgtccctggaaggaatataaatcagat
tctgggaagccttattattacaattcccaaacaaaggaatcccgctgggcaaaacccaaa
gagctggaggatcttgaagcaatgattaaagctgaagaaaacaggtacatttttaatatt
atgctaattttttgcctgagggccttcaaacctttcctgagggccttcaaacctttcctg
agggccttcaaacctttcctgaggaagtttaaacctttttgctgcggcccttcccaacct
ttcctaggatccttcaaccctttttcctgcgccgcccccggaacgcaggacggcagcgcc
gacaccgccgctgcccacacggaggaggcggccaagcaggacgggtcgggagatgctgct
gcaaagaaggaggatgaggaggcccaaccagttaaaaaaacctacacgtggaacacaaag
gaagaggccaaacaagcatttaaagaactgttaaaagaaaagcgggttccatccaatgct
tcctgggagcaagccatgaaaatgatcatcaatgaccccagatacagtgctttggcaaaa
ctgagtgagaaaaagcaagcctttaacgcctacaaagttcagacagagaaggaggagaag
gaagaagccagatccaagtacaaggaagccaaggaatccttccagcgcttcctggaaaac
cacgagaagatgacatccaccaccagatacaagaaagctgaacaaatgtttggggagatg
gaagtgtggaacgccatatccgagcgggaccggctggagatttacgaggatgttctgttc
ttcctgtccaagaaggagaaggaacaagccaagcagctgcggaagaggaactgggaagct
ctgaagaacattctggataacatggccaacgtcacctactgcaccacctggtcagaggca
cagcagtacctcatggacaaccccaccttcgccgaggatgaggagctccagaacatggat
aaggaggacgccctgatctgttttgaggaacatatcagagccttggaaaaagaggaggag
gaagagaagcagaaaagtttgctgagggaaaggaggaggcagcgtaaaaacagggaatct
ttccagctgtttctggacgagctgcacgagcacgggcagttacattccatgtcctcctgg
atggaattgtacccggccatcagctccgacatccgcttcaccagcatgctcggccagccc
ggatcaacagcgctggacctgttcaagttctacgtggaggatttaaaagctcgttaccac
gatgagaaaaagataattaaagacatcttaaaggataaaggatttgtggtggaagtgaac
acttccttcgaggattttgtcaccgtcatcagctccactaaaagagccaccacgttggat
gcagggaatatcaaactggctttcaacagtctgctggagaaggcggaagcgcgggaacgg
gagcgggaaaaggaggaagcgcggaagatgaagaggaaggaatcggctttcaagagcatg
ttgaaacaagccaccccccccatcgagctggatgctgtctgggaggatatccgagacagg
tttgtgaaggagccggcatttgaagacatcaccctggaatctgaaaggaaaaggatattt
aaggatttccttcatgtccttgagcacgagtgtcaacaccaccactccaagaccaagaaa
cattcgaagaaatccaaaaaacatcaccggaagcgctcccgttcccgctccggctcagag
tccgaggatgacgacagccactccaagaagaagcggcagcgctcggaatcgcggtcggtg
tcggagcgttcttccagcgccgagtccgagaggagttacaagaagtccaaaaaacacaag
aagaagagcaagaagaggaggcacaagtctgattcaccagaatctgacgtggaacgagag
aaggacaagaaagaaagagagagggatagcgagaaggaaagagccagacagagatctgag
tccaagcataaatctcccactaaaaaacggcctggaaaagattccggaaactgggatacc
tctggcagcgagctcagcgagggggagctggaaaaacagaggaggactcttttggaacag
ctggatgaagatcagtga
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