Parus major (Great Tit): 107207257
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Entry
107207257 CDS
T04864
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X3
KO
K06823
collagen type XVIII alpha
Organism
pmaj
Parus major (Great Tit)
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pmaj04147
]
107207257 (COL18A1)
00535 Proteoglycans [BR:
pmaj00535
]
107207257 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
pmaj00536
]
107207257 (COL18A1)
Exosome [BR:
pmaj04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
107207257 (COL18A1)
Proteoglycans [BR:
pmaj00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
107207257 (COL18A1)
Glycosaminoglycan binding proteins [BR:
pmaj00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107207257 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Fz
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
107207257
NCBI-ProteinID:
XP_015489509
Ensembl:
ENSPMJG00000006305
LinkDB
All DBs
Position
7:641013..678380
Genome browser
AA seq
1455 aa
AA seq
DB search
MRLYGSGGAGLASFFPGLMTVAGRCQPIPTHLPFCSLLGTSHVRLPNYLRHGSEEEIRVA
LHEWEGLLESRCHRYLEWFLCLLLLPGCSPSVPVTPPPCQGFCEAVRDLCWTHLASGRLP
LPCDALPEEDEGVSCVFINSSAESLSAEVSLLELIGDPPTEEIHRIYGPDNNPGYVFGPN
ANTGQVARYHLPSPFYRDFSLLFHIQPTTPRAGVLFAVTDSSQSIIYVGVKLSELRAGQQ
QIIFYYTEPGSPSSYPAATFTVPTLLNQWTRFAISVEEEEVVLYLDCEEHERVRFERSPD
EMELEEGSGLFVAQAGGADPDKYQGVIADLKLRGDPRAAERQCEEEEDDTEVSGDFGSGM
EGGQKFSGKVEGVPGLVEAVPVTSPPVAGGSGPRSGGGSLQQAERTRVEETLQVSTGGTG
RKGEKGEKGQRGLKGDSGTDGTIGPGSVKGQKGEKGDLGVKGSAGFGYPGSKGQKGEPGD
PGPPGAPSRHTDGSVVEQVTGPPGPPGKDGAPGRDGEPGDPGEDGKPGEMGPPGFPGLPG
EPGLKGEKGDPGMGPRGPPGPPGPPGPPGPSSKNDKLTFIDMEGSGFGGDLESLRGPQGP
PGPPGPPGVPGLPGEPGRFGMNRTDLPGPPGLPGRDGIPGPPGPVGPQGPPGRDGEAGQP
GPKGERGDVGDLGLPGLPGPKGNKGEAGPVGPPGEMGLAGLPGPIGPRGQPGPPGPPGPP
GPGYEAGFGDMEGSGLSFSPGPPGPEGPQGVPGLPGVKGEVGSPGQPGLPGAKGDTGMPG
VDGRPGLEGFPGPQGPKGDKGSAGEKGERGQDGVGLPGPPGPPGPPGQVVTVSSEDKSLV
AFPGPEGRPGHAGFPGPMGPKGDQGSTGPQGAPGLKGEKGEPGVIISPDGTVVTAKVKGE
KGEPGLRGPMGPSGPPGRAGMKGEIGFPGRPGRPGMNGLKGEKGDPADVLGLRGPPGLPG
PPGPPGPPGSIVYNNGNTFSDSGHPVFPGFHQFPGQKGEKGDTGPPGPPGQFPYDMSHFG
TSLRGDKGDTGPKGEKGEPGSTPLYGPGVSGLPGPPGPQGYPGLPGPKGDSIVGPPGPPG
PQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQAVSIPGPPGPPGPPGPPGTSGMSLGIR
AVPTYQAMLSSAHELPEGSLVFLTDRQELYVRLRGGFRRVLLEEHNLIPSSALDNEVYDK
PPTLHYAGPQPRGPLHPLRNHVPPATARPWRGDEVVANQHRLPEQPLLHHQHELINGYYI
HRRPDPVPVAAHVHQDFQPALHLVALNTPLNGGMRGIRGADFQCFQQARQVGLAGTFRAF
LSSRLQDLYSIVRRADRATIPIVNLQDEVLFNNWEALFMGSGAPLQAGARILSFDGRDVL
RDEGWPQKSVWHGSDAKGRRLPESYCETWRTEERTVTGQASSLASGKLLEQVASSCQHAF
IVLCIENSFMTSAKK
NT seq
4368 nt
NT seq
+upstream
nt +downstream
nt
atgcggctctacgggagtggcggcgcggggctcgcatccttctttccaggactgatgaca
gtggccggccgttgccagcccatcccaacccacctgcccttctgcagcctgctgggcacc
agccatgtccgattgccaaattacctccggcacggcagcgaggaggaaattcgggtggct
ttgcatgagtgggaggggctgcttgagtcacggtgccatcgctacctggagtggttcctc
tgcttgctgctgctccctggctgtagcccctcggtccccgtaacccccccgccgtgccag
ggcttctgcgaggccgtcagagacctgtgttggactcacttggccagcgggcgcctgcct
ctgccttgcgatgctctccctgaggaggatgaaggggtttcttgtgtctttattaattct
tctgcagagagcctgagtgcagaggtcagcctgctggagctgattggggacccgccaacg
gaggagatccacagaatttatggccccgacaacaaccctggctacgtctttggtcccaac
gccaacacgggccaggtggcccggtaccacctgccgagccctttctaccgggacttctcg
ctgctgttccacatccagcccaccacgccccgggccggcgtgctctttgctgtcacggac
tcctcgcagagcatcatctacgtgggtgtcaagctctcagagctgcgggcgggccagcag
cagatcatcttctactacacagagccgggctcacccagctcctacccagccgccaccttc
accgtgcccaccctactcaaccagtggacacgctttgccatcagcgtagaggaggaggaa
gtcgtcctctacctggactgtgaggagcatgagcgcgtccgcttcgagcgctccccagat
gagatggagctggaagagggctccgggctcttcgttgctcaggctggaggggctgaccca
gataaataccagggtgtgattgcagatttgaagctccgaggtgacccgcgagcggccgag
cgccagtgcgaggaagaggaggatgacacagaggtctctggggattttggcagcgggatg
gaaggtggacagaagttctcaggcaaggtagagggtgtcccagggctggtggaggctgtc
cccgtgacctccccccccgtggcggggggcagtggcccgaggagtggcggggggtccctg
cagcaggccgagaggaccagggtggaggagacgctgcaggtctccacgggaggcaccggc
cggaaaggcgaaaagggggagaaggggcaacgtggcttgaaaggggactcagggaccgat
ggtaccatagggccaggcagtgtcaagggtcaaaagggtgagaaaggagacctgggtgtc
aagggcagtgctggatttggctaccctggctctaagggccagaaaggagaaccaggtgac
cctggaccccctggggccccgtctcggcacactgatggctcggtggtggagcaggtcacc
ggccccccagggccaccagggaaggatggagcccctggcagggatggcgagcctggtgat
cccggcgaggacggcaaacctggtgaaatggggcccccggggttccctgggctgccgggg
gagccaggcctgaagggggagaagggtgacccaggcatggggccgaggggacctcctgga
ccacctggccctccaggaccgccgggaccttcctccaagaatgacaagctgaccttcatc
gacatggagggctcaggcttcggcggtgacctggagagcctgcggggtccacaagggcca
cctggtcccccagggccacctggtgtgcctggtttgccaggagagccaggacggtttggg
atgaaccgcacggacctgccaggaccaccagggctgccgggcagggatgggatccctggg
cccccggggccagtgggtcctcagggtcctccaggaagagatggggaggccgggcagcca
gggcccaaaggagagcggggcgatgtgggtgacctcggcctccctggcctaccgggaccc
aagggcaacaaaggagaagcgggaccagtgggacccccaggagaaatgggcttagctggc
cttcccgggcccatcggaccccgagggcagccagggccccccggacccccgggaccaccg
gggccaggctacgaggctggatttggtgacatggagggctcggggctgtcattcagccct
ggaccacctggacctgaaggaccacagggtgtgccgggactgccaggggtgaagggagag
gttggcagccccggacagcctggcttgccaggagcaaagggagatactggcatgcctggt
gtggatggccgccctggcctggagggcttccctggaccacagggacccaaaggtgacaaa
ggcagcgccggtgagaagggagagcgaggccaagatggagtggggctgcctggcccccct
ggaccacctggtccccctggacaggtcgtcactgtctccagtgaagataagtccttggtg
gcttttcctggtccagagggaagaccaggccacgctggcttcccgggaccaatgggacca
aaaggagaccaggggtcaactggtccccagggtgccccagggttgaagggggagaagggg
gagcctggtgtcatcatcagccccgatgggactgtggtcactgccaaggtgaagggagaa
aagggggagccggggctgcggggtccaatgggaccatcgggtcccccaggacgagcaggg
atgaagggagagattggctttccgggcagacccggacgtcccggcatgaacgggctgaag
ggcgagaagggtgaccccgcggatgtgctgggcttgcggggccccccaggcctcccagga
ccccctgggccccctgggccacctggcagcatagtctacaacaatggcaataccttcagc
gactctggccatccggtgttccctggtttccaccagttcccaggacaaaagggagagaaa
ggtgacactggacccccaggacccccaggccagttcccttatgacatgagtcacttcggt
accagcctgcggggtgacaagggggatacaggtcccaagggtgagaaaggcgagccaggc
agcaccccactctatggtcctggagtctctggacttccagggcctccagggccccaggga
taccctgggctgccgggtcccaagggggacagtattgttgggcctccggggcctccagga
cctcagggtccccctggtatcggatacgaggggcggcagggcccccctggccctcctggt
cctcctggcccaccctccttcccaggtccccacagacaagctgtcagcatccctggaccc
ccgggaccaccaggaccccctggaccaccaggcactagtgggatgtccttggggatccgg
gccgtgcccacgtaccaggcgatgctgagcagcgcgcacgagctgcctgagggcagcctc
gtcttcctgaccgaccggcaggagctctatgtccgcctgcgcgggggcttccgcagggtg
ctgctggaggaacacaacctgatccccagttcggctctggacaatgaggtgtacgacaaa
ccgcccaccctccactacgctggcccccagccccgcgggcccctgcacccgctccgcaac
catgtccccccagccaccgcccgtccctggcgtggggacgaggtggtggccaaccagcac
cgcctgcccgagcagcccttgctgcaccaccagcatgaactcatcaacgggtactacatt
caccgccggccagatcctgtgcccgtggccgcccatgtgcaccaggacttccagccagca
cttcacctggtggccttgaacaccccgctgaatggcggcatgcgcggcatccggggcgcc
gatttccagtgcttccagcaagcccggcaggtcgggctggctggcaccttccgcgccttc
ctgtcctcacgcctgcaggatctctacagcatcgtgcgcagggccgaccgtgccaccatc
cccatcgtcaacctccaggatgaagtgctcttcaataactgggaagcccttttcatgggc
agcggggccccactgcaagctggtgcccgcatcctctcctttgatggccgggatgtcctg
cgggatgagggatggccgcagaagagtgtctggcacggctcggatgccaagggccggcgc
ttgcccgagagctactgcgagacgtggcggacagaggagcgcacagtcactggccaggct
tcgtccctggcctctggaaaactgctggagcaggtggccagcagctgccagcacgccttc
atcgtcctctgcatcgagaacagcttcatgacctccgccaaaaagtga
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