Parus major (Great Tit): 107207313
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Entry
107207313 CDS
T04864
Symbol
PMS1
Name
(RefSeq) PMS1 protein homolog 1 isoform X1
KO
K10864
DNA mismatch repair protein PMS1
Organism
pmaj
Parus major (Great Tit)
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmaj03400
]
107207313 (PMS1)
DNA repair and recombination proteins [BR:
pmaj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
107207313 (PMS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
HMG_box
HATPase_c_3
HMG_box_2
HATPase_c
HMG_WDHD1
HMG_box_5
CHDNT
Motif
Other DBs
NCBI-GeneID:
107207313
NCBI-ProteinID:
XP_015489659
Ensembl:
ENSPMJG00000008285
LinkDB
All DBs
Position
7:7230144..7273783
Genome browser
AA seq
937 aa
AA seq
DB search
MNLSTMKQLPGETIRLLSSSQVITSVVSVVKELIENSLDASATGIDIKLENYGFSKIEVR
DNGSGIKVDDVPVMAIKHYTSKISSSEDLERLTTYGFRGEALGSICSISEVLVTTKTAAD
DFSIQYALDSNGHVTSKKPSHLGQGTTVTVLNLFKNLPVRKQFYSTSRKCKEELKKVQDL
LTAYGIIKPDLRITLTHNKAVIWQKTRVSDHKMACMSVLGTAVMSSMVPFQHCCEYPEIN
LSGFLPKAESDNSLTSLSSSERSFIFINNRPVLQKEILKLIRQYYSQVTQKDSTRLYPVF
FLSITVPASAVDVNITPDKTQVLLHYKESVLLAVENVLKSLYGPLPAAVPGESNKTDVTS
EDMFVHRTDQTDVAVNEMGPSGNDELHAHTSFLSLSSDVQNCQAGKNAEICLNHQTFSGD
NVHSCLDKREVSKSDAFPDSSLNLLREEEQNGQNMADIQSDSVPVDPESKKANKQLLISD
NIDKIDKNEEALVPKDLPEISADSWSMGSAFKDCLGDKLEPVKILIPEVGGTTNERREYT
GEKSYDPQSSNQSIKKKNLISEKFGRVTAYDLINSRIIKKPKSAFEFFTHECRPKLINDN
PKTSMNDILLTIEEQWKNLNEEEKQNYEMKATKDQERYNREVKKANAQPMHRPAKEAEKH
KSKLKNAASDQQKLDKIFHDQIGKKGKMEQPVKIVTVPFSLSLCRRHLQRQERNVSDEHE
LFLIRRQSFPDVWIFATEKNVKLLNPYRLEEALLCKRLLVNHKLPAQKLDNPIVLTDSLI
GGSQYMAALYKMQKNQSFHGSGYLSDPRLVANGFQIKVIEGVMAAESHLEIEGMANCLPY
YGISDLKEILNAVVNRNAKEVYECRPLKVINYLEGEAVRLARQLPLHLSKEDVQNTIYRM
KQQLGRENKGCVHGRPFFHHLTDIPEVDKHNSMEIIQ
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgaatctttccaccatgaaacagctgcctggagagacaattagactcctttcaagttct
caggtgattacttcagttgtcagtgtggtgaaggagctgatagaaaattccttggatgcc
agtgctacaggcattgatattaaactggagaattacgggtttagcaaaatagaggtaaga
gacaatggcagtggaatcaaggttgatgatgttccagttatggcaattaaacactacacc
tcaaaaatcagctcttctgaggaccttgaaaggctgacaacgtatggtttccgtggggaa
gctttaggatcgatttgcagcatatcagaggttttggtcacaacaaagacagctgcagat
gatttcagcattcagtatgctttggatagcaacgggcatgtaacctctaaaaagccttcc
catcttgggcaaggtaccacagtaacagtcctaaatttgtttaagaatcttcctgtaaga
aagcagttttactcaacaagtagaaaatgtaaggaagaactgaaaaaagtccaagatcta
ctgacagcatatggtattataaaaccagacctgaggataacattaacgcataacaaggca
gttatttggcagaagaccagggtatcagatcacaaaatggcctgtatgtcagttctggga
acagccgttatgagcagtatggtaccttttcaacactgctgcgaatatcctgagataaat
ctttctggatttctcccaaaagctgagtcagacaattctttgacaagcctttcaagttca
gaaaggagtttcatttttataaataatcgtccagttcttcagaaggaaatactgaagtta
attcgacagtactacagccaggtgacacaaaaggacagtactcgtttatatcctgttttc
tttttgagtattactgtacctgcctctgctgtggatgtgaatataacacctgataaaaca
caagttttgctgcattataaggaatccgtcttacttgcagttgaaaatgtgttgaaatca
ctgtatgggccactacctgctgcagtccctggtgaaagtaataaaacagatgttacctca
gaagacatgtttgttcatagaacagaccaaacagatgtggctgttaatgaaatgggacca
tctggaaatgatgagctacatgctcatacttcattcctttcactcagcagtgatgtgcaa
aactgtcaagcaggaaaaaacgcagagatctgcttaaatcatcagacatttagtggtgat
aatgtacacagttgcctggacaaaagagaggtttctaagagtgatgcctttccagacagt
tccttaaatttattgcgtgaggaggaacagaatggacaaaatatggctgatattcaaagt
gatagtgttcctgtggaccctgagtctaaaaaagccaacaagcaacttttgatttctgat
aatattgacaaaatagataaaaatgaggaagccttagtccctaaggacctacctgaaatc
tctgctgatagttggagtatgggaagtgcatttaaagactgtctgggagacaagctggaa
cctgttaagatcttgattcctgaagttggagggacaactaatgagcgaagggaatatact
ggtgaaaaaagctatgatccacaaagctctaatcaaagcataaagaaaaaaaatttgata
agtgaaaaatttggacgtgtgacagcttatgacttaattaatagcagaataataaagaaa
ccaaagtctgcatttgaatttttcacacatgaatgccgtccaaaattgataaatgataat
ccaaagaccagcatgaatgacatcctgctgacaattgaagagcagtggaagaatttgaat
gaagaggaaaaacagaattatgaaatgaaagccactaaggaccaggaacggtacaacaga
gaggtcaaaaaagccaatgcacagccaatgcaccgaccagcaaaggaggcagaaaaacac
aaatccaagctaaagaatgctgcatctgaccagcagaagcttgacaagatatttcatgac
cagattggaaagaaggggaaaatggaacagcctgtgaaaattgtgacagtgcctttttct
ctgagtttgtgtagacgtcaccttcagagacaagagagaaatgtttcagatgaacacgag
cttttcctgatccgtcgtcagagttttcctgatgtctggatatttgctactgaaaaaaat
gtaaagttgctgaatccatatagattggaagaggccctgctatgtaagagattattggtg
aaccataagcttccagcacagaaactggacaatccaattgtgttaacagacagtcttatt
ggtggatctcagtatatggctgctctttataaaatgcagaagaaccagagtttccatgga
tcaggttatttgtcagatccaaggcttgtggcaaatggattccagataaaagtgatagaa
ggtgttatggctgcagaaagtcatctggaaatagaagggatggcaaattgtctgccatat
tacggaatttctgatttgaaagaaattctgaatgcagttgttaacagaaatgcaaaggaa
gtatatgaatgtaggcctctcaaagtgataaattacttggagggagaagcagtacgttta
gctcggcagctgcccttacatttgtcaaaagaagatgtgcaaaacacaatttacaggatg
aagcaacagcttggaagggaaaataaaggctgtgttcatggtcgtcctttttttcatcac
ttaacagatattccagaagttgacaagcacaactccatggaaattattcagtaa
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