Parus major (Great Tit): 107207489
Help
Entry
107207489 CDS
T04864
Name
(RefSeq) sodium channel protein type 1 subunit alpha isoform X1
KO
K04833
voltage-gated sodium channel type I alpha
Organism
pmaj
Parus major (Great Tit)
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pmaj04040
]
107207489
Ion channels [BR:
pmaj04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
107207489
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
IQ
New_glue
FraC
Lustrin_cystein
ATP-synt_B
Motif
Other DBs
NCBI-GeneID:
107207489
NCBI-ProteinID:
XP_015490169
LinkDB
All DBs
Position
7:19237689..19328888
Genome browser
AA seq
2013 aa
AA seq
DB search
MEQSVLVPPGPDSFQYFTRESLAAIEQRIAAEKAKNPKQDRKDDDENGPKPNSDLEAGKT
LPFIYGDIPPGMVSEPLEDMDPYYINKKTFIVLNKGKAIFRFSATSALYILTPFNPLRKI
AIKILVHSLFSMLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKIIARGFCL
EDFTFLRDPWNWLDFTVITFAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCLQWPPENFTLETNITSQLNSTIG
ENGTLVNSTVTPFDWKGYIEDESHFYFLEGQNDALLCGNSSDAGQCPEGYTCVKAGRNPN
YGYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLIL
AVVAMAYEEQNQATLEEAEQKEAEFQQMLEQLKKQQEAAQAAAVAASAVTASAESREPSA
AGEAGGLSESSSDASKLSSKSAKERRNRRKKRKQKEQSGGEEKDEEEFHKSESEDSIRRK
GFRLSIEGNRLTYEKKYSSPHQSLLSIRGSLFSPRRNSRTSLFSFRGRAKDVGSENDFAD
DEHSTFEDNDSRRDSLFVPRRHGERRNSNISQASRSSRMLAVFPVNGKMHSTVDCNGVVS
LVGGPSVPTSPVGQLLPEVIIDKPATDDNGTTTEPEMRKRISGSFHISMDFLEDPALRER
AMSIASILTNTVEELEESRQKCPPCWYKFANIFLIWDCSPHWLKVKHIVNLVVMDPFVDL
AITICIVLNTLFMAMEHYPMTDEFSNVLSVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGW
NIFDGFIVTLSLVELGLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGN
LTLVLAIIVFIFAVVGMQLFGKNYKECVCKIASDCVLPRWHMQDFFHSFLIVFRVLCGEW
IETMWDCMEVAGQAMCLTVFMMVMVIGNLVVLNLFLALLLSSFSADNLAVTDDDNEMNNL
QIAVARIQKGIDYVKRKAREFIQKAFVKKQKALDEIKPLEDLNNKNSCISNHTTVELSKD
HDYIKDANGTTSGIGTGSSVEKYIIDESDYMSFINNPSLTVTVPIAVGESDFENLNTEEF
SSESDLEESKEKLNSSSSSEGSTVDIGLPAEEQPEAEPEEAQEPEACFTEGCVRRFKCCQ
VSIEEGRGKQWWNLRKTCFRIVEHNWFETFIVFMILLSSGALAFEDIYIEQRKTIKTMLE
YADKVFTYIFILEMLLKWVAYGYQTYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIK
SLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKF
YYCVNTTTDERFEVDQINNFSQCEELIKNNQSARWKNVKVNFDNVGFGYLSLLQVATFKG
WMDIMYAAIDSRDVLEQPKYEDNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKF
GGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPGNKFQGMVFDFVTQQVFDISIMILICL
NMVTMMVETDDQSKEMENILYWINLVFIVLFTGECVLKLISLRHYYFTIGWNIFDFVVVI
LSIVGMFLAEMIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNI
GLLLFLVMFIYAIFGMSNFAYVKREAGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPI
LNSGAPDCDPHKAHPGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFGVAT
EESAEPLSEDDFEMFYEVWEKFDPDATQFMEFEKLSDFAAALEPPLHLPKPNKVQLIAMD
LPMVSGDRIHCLDILFAFTKRVLGESGEMDALRIQMEDRFMASNPSKASYEPITTTLKRK
QEEVSAVIIQRAYRRHLLKRTVKQASFIYNKNKTEGGAGQGLKDEILIDKLNENSFTEKT
DITASTAVCPPSYDRVMRPVKEKHEKEDKDGQK
NT seq
6042 nt
NT seq
+upstream
nt +downstream
nt
atggagcagtcagtgcttgtaccaccaggaccagacagcttccaatacttcactagagag
tctcttgcagctattgaacaacgcattgctgcagaaaaagctaagaatcctaaacaagat
cgtaaagacgacgatgaaaatggcccaaaaccaaacagtgatttggaggcaggaaaaacg
ctcccctttatttacggcgacatacctccaggaatggtgtctgagcccttggaagacatg
gacccatattacatcaataaaaaaacctttatagtattgaataaagggaaggcaatattc
cgattcagtgccacctctgccctgtacattttaacacccttcaaccctcttagaaaaata
gctattaaaattttggtacattcattattcagcatgcttatcatgtgcactattttgacc
aactgcgtatttatgaccatgagtaaccctccagactggacaaagaatgtagagtatacg
ttcactggcatttacacatttgagtcactaataaaaatcattgcaaggggcttttgctta
gaagattttacttttcttcgagatccatggaactggcttgatttcactgtcattaccttt
gcatatgtgacagagtttgtggacctgggcaatgtctcagcgttgagaacattcagagtt
ctccgagctttgaaaacaatatcagtcattccaggcctgaagactatagtgggagccctg
attcagtctgtgaagaagctctcggatgtgatgatcctgactgtgttttgtctgagtgta
tttgcactgatagggctgcagctgttcatgggcaacctgaggaataaatgcctgcagtgg
cctccagaaaattttactttggaaacaaatattacttcccagctaaacagcaccataggt
gaaaatggtacattggttaattcaacagtgactccgtttgactggaaggggtacattgaa
gatgaaagtcatttttattttctggaagggcagaacgatgctctgctctgtggaaacagc
tctgatgctgggcagtgcccagaaggatatacttgtgtgaaagctggcagaaaccccaac
tatggctacacaagttttgacaccttcagctgggctttcttgtcgctgtttcggctaatg
actcaggacttctgggaaaacctttatcaactgactcttcgtgctgctgggaagacatac
atgatattttttgttctggtgatttttctgggctctttctatctgataaacctgatcctg
gctgtggttgccatggcctacgaagaacaaaatcaagcaaccctggaagaggcagagcag
aaagaggcggaatttcaacagatgctggaacaactgaagaagcaacaagaagcagcccag
gcagcagcagtggcagcatcagcagtaacagcatctgcagagtccagggagcccagtgct
gcaggagaagcaggagggctctcagaaagttcctcagatgcatcaaaattgagctcaaag
agtgcaaaagagaggagaaatagaaggaaaaaaaggaaacagaaagaacagtctggagga
gaggaaaaagatgaagaggaatttcacaagtctgaatcagaagacagcatcagaaggaaa
ggtttccgattgtctattgaaggcaatagattgacatatgaaaagaagtattcttctcca
catcagtctttgctgagcattcgtggctccctgttttccccaaggcgcaacagcagaaca
agtcttttcagcttcagaggtcgagcaaaagatgtaggatcagagaatgactttgctgat
gatgagcacagcacctttgaagacaatgacagcagaagagattctctctttgtgccgcgc
aggcacggcgagcggcgcaacagtaacattagccaggccagtaggtcatccaggatgctg
gcagtgtttccagtcaatgggaagatgcacagcaccgtggattgcaatggggtggtttcc
ctggtcggtggaccatctgttcctacatcgcctgttggacagcttctgccagaggtgata
atagataaaccagctactgatgacaatggcaccacgacagaaccagaaatgaggaagaga
atatcaggttcttttcacatttctatggacttcctggaagatccagctttaagggaaaga
gccatgagtattgctagcatcctcacaaacactgtggaagaacttgaagaatcaaggcag
aaatgcccaccatgttggtataaatttgcaaatattttcttgatctgggactgcagtcca
cattggttaaaagttaagcatattgtcaacttagtggtaatggacccatttgttgacctg
gctattacaatttgcattgttttaaatacactcttcatggctatggaacattatccgatg
acggatgaattcagtaatgtactttcagttggaaatctggtcttcactggaatcttcaca
gcagaaatgtttctcaagataattgcaatggatccttactattatttccaggaaggctgg
aatatttttgatggttttattgttacccttagcttggttgaacttggtcttgcagatgtg
gaaggactatcagttcttcgatcattcagattgttacgagttttcaaattggcaaaatct
tggccaacactaaatatgctgataaaaatcattggtaattccgtgggagctctggggaat
ctgaccctggtgctggccatcatcgtgttcatttttgctgtggttgggatgcagctgttt
gggaaaaactacaaggaatgcgtctgcaaaattgcaagtgactgcgtgcttcctcgctgg
cacatgcaagactttttccactctttcctgattgtattccgagtgctgtgtggagaatgg
atagaaacaatgtgggactgcatggaggttgcaggccaagccatgtgccttacagtcttc
atgatggtcatggtgattggaaacctagtggtactgaatctatttttggccttgctcttg
agctcatttagtgcagacaacctagctgtgacagatgatgataacgaaatgaacaatctc
cagatcgctgtggcaaggattcagaaaggcatagattatgtgaagagaaaagcacgtgaa
ttcatccaaaaagcctttgttaaaaaacagaaagctttagatgaaatcaagccacttgaa
gatttaaacaacaaaaatagctgtatttctaaccatacaactgtggaactaagcaaggac
catgactatattaaagatgcaaatggaaccaccagtggtataggcacaggtagcagtgtg
gaaaaatacataattgatgagagtgattacatgtcattcataaacaacccaagcctcact
gtgacagtgcccattgctgtgggtgaatccgactttgaaaatctaaacacagaagaattt
agtagtgaatcagacctggaagaaagcaaagagaagttaaattcatctagttcttctgaa
ggcagcacagttgacattggacttcctgcagaagaacaaccagaagctgaacctgaggaa
gcccaggagccagaggcctgcttcacagaaggctgtgtaagaaggttcaagtgctgtcaa
gtaagcatagaagaagggagaggaaagcagtggtggaaccttagaaaaacctgcttcagg
attgttgaacacaactggtttgagactttcattgtctttatgattctcctcagtagtgga
gctctggcttttgaagacatctatattgagcaacgtaaaaccatcaagaccatgctggaa
tatgctgacaaggtcttcacttacatcttcattctggaaatgctgctgaagtgggtggcc
tatggctaccaaacatattttactaatgcctggtgctggctggacttcctgattgtcgat
gtctctttggttagcttaacagcaaatgcattgggttactctgaacttggtgccattaag
tcccttaggacactaagagctttgagacctctaagagctttgtcacgatttgaaggcatg
agggtggttgtgaatgcccttttaggagcaattccatccatcatgaacgtgcttctcgtt
tgtcttatattctggctaattttcagcatcatgggagtaaatctgtttgctgggaagttc
tactactgtgttaacaccacaactgatgaaaggtttgaagtcgaccaaatcaacaatttt
agtcagtgcgaggaactcataaaaaacaatcaaagtgcccgatggaaaaacgtgaaagta
aactttgataatgtaggatttgggtatctttctttacttcaagtagctacatttaaaggc
tggatggatattatgtatgcagctattgactcaagagatgtgttagagcaaccgaagtat
gaagacaacttgtacatgtacctgtattttgtcatctttataattttcgggtcttttttc
accctgaatttgttcattggtgtcattattgacaatttcaatcagcaaaaaaagaagttt
ggaggtcaagacatatttatgacagaagagcagaagaaatactacaatgcaatgaaaaag
ctgggatccaaaaaaccacaaaaacctataccaagaccagggaacaaattccaaggcatg
gtctttgattttgtgacacagcaagtatttgacatcagcatcatgattcttatttgtctt
aatatggttaccatgatggtagaaactgatgaccagagcaaagaaatggaaaatatttta
tactggattaatctcgtgttcattgtccttttcactggagaatgtgtcctgaaattaatt
tcacttcgccattactacttcactataggctggaacatttttgattttgtggttgtcatt
ctctctatagtaggtatgttcttagctgagatgattgagaagtacttcgtatctcccaca
ctattcagagtcatcaggcttgccagaatcggtcgaatcctgcgcctcattaaaggcgct
aagggaatccgcactctgctttttgctttgatgatgtctcttcctgctctgttcaacatt
gggctgctgcttttcctggtcatgttcatctatgccatatttggcatgtccaactttgcc
tatgtcaaaagggaagctggtattgatgacatgttcaactttgaaacgtttggcaacagc
atgatctgcctgtttcagatcaccacgtccgcgggttgggatggtttgctcgccccaatc
cttaacagtggggctccagactgtgacccccataaggctcatccagggagctctgtgaaa
ggtgactgtggcaacccttctgttgggattttcttctttgtcagttacattatcatttcc
ttcctggtagtggtgaacatgtacattgctgtgattttggagaacttcggtgttgctact
gaagaaagtgctgaacccttgagtgaggatgactttgagatgttttatgaagtctgggag
aagtttgatcctgatgcaacacaattcatggaatttgagaaattatctgattttgcagca
gcacttgagcctcctcttcatctacccaaacctaacaaagtccagcttattgcaatggat
ctgcccatggtgagtggtgaccgaattcactgccttgacatcttgtttgctttcacaaag
cgtgtgctgggggaaagtggggagatggatgccctcagaatacagatggaagatcgattc
atggcatccaatccttctaaagcttcctatgaaccaattacaaccacactgaaacgaaag
caggaggaggtgtctgctgtcatcattcagcgtgcttacagacgtcacctattaaaacga
acagtaaaacaagcttcctttatctataacaaaaataaaactgaaggtggagctggtcag
ggtctgaaagatgaaatccttattgacaagttaaatgaaaactcatttacagagaaaaca
gatataaccgcatcaactgcagtttgtccaccttcctatgatcgtgtaatgaggccagtc
aaagaaaagcatgaaaaggaagataaagatggtcagaaataa
DBGET
integrated database retrieval system
