Parus major (Great Tit): 107207710
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Entry
107207710 CDS
T04864
Symbol
COL5A2
Name
(RefSeq) collagen alpha-2(V) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
pmaj
Parus major (Great Tit)
Pathway
pmaj04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
107207710 (COL5A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pmaj00536
]
107207710 (COL5A2)
Glycosaminoglycan binding proteins [BR:
pmaj00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107207710 (COL5A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
TILa
Amnionless
Motif
Other DBs
NCBI-GeneID:
107207710
NCBI-ProteinID:
XP_015490806
LinkDB
All DBs
Position
7:complement(6966941..7069347)
Genome browser
AA seq
1496 aa
AA seq
DB search
MMAVLVQTRTFLILAALLGRFVTIKAQEVEEYEGGEDGEEIACTQNGQMYLNRDIWKPSP
CQICVCDNGAILCDEIQCQDMLECENPQVPPGECCPVCPHTPRDFDPTIGRGRKGQKGEP
GIVPPVSGIRGRPGPAGPPGSQGPRGERGPKGRPGPRGPQGIDGEPGIPGQPGDPGPPGH
PTHPGPDGISRPFSAQMAGLDEKSGLGSQMGLMPGAVGPVGPRGPQGLQGKQGGAGPTGP
PGEPGDPGPMGPVGSRGPEGPPGKPGEDGEPGRPGQSGEPGFPGSPGPRGFPGAPGLPGL
KGHRGLKGLDGPKGEIGAAGAKGESGPTGAMGPTGPLGPRGMPGERGRIGPQGAPGGRGQ
HGMPGKPGPMGPLGITGSPGFPGIPGMKGEAGPTGPRGPEGPQGQRGETGPQGPAGSQGL
PGAEGTDGSPGAKGPTGSPGTGGPPGLTGPPGSPGPQGSTGPPGIRGQPGDPGVPGFKGE
AGPKGEPGPQGPQGPIGPIGEEGKRGPRGDPGSVGPPGPVGERGAPGNRGFPGSDGLPGP
KGAQGERGPAGSSGPKGGQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGGPGEDGR
PGPAGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGP
PGLAGERGEQGPPGPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGE
RGEPGASGLQGEKGMAGGHGPDGPKGSPGPSGTPGDPGPPGLQGMPGERGIAGTPGPKGD
RGGVGEKGAEGTAGNDGARGLPGPIGPMGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGE
NGPTGAVGFAGPPGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSHGPPGPPGVPGLKGG
RGTQGPPGATGFPGSAGRVGPPGPTGAPGPAGPIGEPGKEGPPGLRGDPGSHGRVGDRGP
TGPPGGPGDKGDPGDDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGK
QGPTGPPGDKGPPGPIGQSGATGPVGEAGPEGPAGNDGTPGRDGAVGERGDRGEPGPAGL
PGSPGGPGTPGPVGPPGDAGQRGETGSRGPMGPPGRAGKRGLPGPQGPRGDKGDNGDRGD
RGQKGHRGFTGLQGLPGPPGPVGEQGSPGIPGPFGPRGPPGPVGPSGKDGSPGPLGPIGP
PGVRGTVGEAGPEGPPGEPGPPGPPGPPGHLTAAIGDIMGHYDDAMADPLPEFTEDEAAP
DDHNKTDPGVHATLKSLSSQIETMRSPDGSKKHPARTCDDLKLCHPSKRSGEYWIDPNQG
CVEDAIKVYCNMETGETCISANPSTVPRKTWWASKSSDLKPVWYGLDMNRGSQFVYGDTA
VTQMTFLRLLSKEASQNITYLCKNSVGYMDDQMKNLKKAVILKGANDLEIKAEGNSRFRY
TVLHDSCSKRNGNVGKTVFEYRTQNVARLPIIDIAPVDIGSTDQEFGIEIGPVCFV
NT seq
4491 nt
NT seq
+upstream
nt +downstream
nt
atgatggcagtcttggtacaaacgagaacttttttgatcctcgctgctttattaggccgg
tttgtaaccataaaagcgcaagaagtggaagaatatgaaggtggagaagatggtgaagaa
atagcctgcactcagaatggacagatgtacctgaacagggatatttggaagccctcacca
tgccaaatttgtgtctgtgacaatggagctattctttgcgatgaaatccagtgtcaagat
atgctggagtgtgagaacccccaggtgcccccgggagagtgctgtcctgtgtgtccccat
acgccacgggactttgaccccaccattggtagaggaagaaagggacaaaaaggagaacct
ggaatagtgccacctgtttcaggcatacgaggccgcccgggaccagccggacctccaggc
tcacaaggtccacgaggagaacgaggaccaaagggaagacctggtcctcgtggtcctcaa
gggattgatggggaacctggtattcctggccagcctggtgaccctggtcctccagggcat
cccactcacccaggaccagatggaataagcaggcccttttcagctcagatggcaggactg
gatgagaagtctggacttggtagtcagatgggactgatgcctggtgcagtgggtccagtg
ggtccaagaggtcctcagggtctccaaggaaaacaaggtggtgctggccccacaggccca
cctggtgaacctggggatccagggcctatggggccagttggttctcgtggaccagaggga
cctccaggcaaacctggtgaagatggtgaacctggtagaccagggcaatccggtgagcct
ggattcccaggatctccaggccctcgaggctttcctggtgctcctggtctgccaggtctc
aagggtcaccggggattgaaaggacttgacggtccaaaaggtgaaattggagcagctgga
gcaaagggagagtctggaccaactggagccatgggtccaacagggcctctaggacctagg
gggatgccaggagaaagaggacgaattggaccacaaggtgctcctggtggacgtggccag
catggaatgcctgggaagccaggcccaatgggcccacttggcataactggatctccaggt
tttcctggtattcctggtatgaagggtgaagcaggtccaacaggtcctcgaggtcctgaa
ggtcctcaaggacaaagaggtgaaacaggtcctcaaggcccagctgggtcacaaggtctt
cctggtgctgaagggacagatggctcccctggtgcaaagggccctactggctctccaggc
actggaggcccccctggattaacaggcccccctggctccccaggaccacagggcagcacc
ggcccccccgggattcgaggccagccgggagaccctggtgtcccaggtttcaagggagaa
gcaggacccaaaggtgaacctggcccacaaggtccccagggtcccattggccccataggt
gaagaagggaaaagaggtcctcgaggtgatccagggtcagtaggtccaccaggtcctgtt
ggagagaggggtgctcctggtaaccgtggttttccaggttctgatggcttgcctggacca
aagggagcccaaggagagcgtggtccagcgggatcttctggacctaaaggaggtcaggga
gatcctggtcgtcctggtgagcctggccttccaggtgcaaggggtttgacaggaaatcca
ggtgttcaaggccctgaaggaaaacttggccccttgggtggtcctggggaagatggacgc
ccaggtccagcaggttccataggaatcagaggtcagccaggcagcatgggccttcctgga
ccaaagggtagtagtggtgatcctggaaaacctggagaagcaggcaatgcaggagtccca
ggacagagaggagcacctggtaaagatggtgaagttggcccttctggtcctgttggccca
ccaggtctggcaggagaaagaggagaacaaggccctccaggtcctacagggtttcagggc
ttgcctgggccaccaggtcctccaggtgagggaggaaagccaggtgaccagggtgtgcct
ggagatcctggagctgttggtccattgggccccaggggagaacgtggcaatccaggggaa
aggggagaaccaggtgcctcaggactccagggtgagaagggtatggctggaggccacggt
cccgatggcccgaagggaagcccaggccctagtgggacacctggtgatccaggcccaccg
ggccttcagggcatgcctggagagagagggattgctggaacacctggccctaagggtgac
agaggtggcgtaggtgagaaaggtgctgaaggtacagctggcaatgatggggcaagaggt
ctccctggtccaataggcccaatgggtccagcaggtcccactggtgaaaagggtgaacca
ggtcctcgaggtctagttggtcctcctggttctcgtggaaaccctggttcccgaggagaa
aatggcccaactggcgctgttggttttgctggacccccgggccctgatggtcagcctggt
gtgaaaggtgaacctggagaacctggacagaaaggagatgctggatctccaggaccacag
ggtcttgctgggtctcatggtcccccaggccctccaggtgttcctggtctgaaaggtggt
agaggaactcagggtccacctggtgctactggattcccaggatctgctggaagagttggg
cctccaggacctactggagccccagggcctgctgggcctattggagaaccaggaaaagaa
ggtcccccaggtcttcgtggtgatcctggttctcatggccgtgtgggagaccgagggcca
accgggcctcctggtggccctggagacaagggtgacccaggggatgatgggcagccgggc
ccagatggcccccctggtccagcaggaactacgggtcaaagaggaattgttggaatgcca
ggacagcgaggggagagaggcatgcctgggctgccagggcctgcaggtactccaggaaaa
caaggtcccacggggccacctggtgacaaaggtcccccaggacctattggccagtcaggt
gccactgggcctgtaggtgaagctggtccagaaggacctgctggtaatgatggtactcct
ggacgagatggagctgttggagaacgcggtgatcgtggtgaacctggccctgcaggatta
ccaggttctccaggaggtccaggaactccaggtcctgttggccctccaggagatgcaggt
caaagaggtgaaactggctctcgaggtccgatgggtcccccaggtcgtgcaggaaaaaga
ggtttgcctggtccccaaggacctcgtggtgacaaaggtgacaatggagatagaggcgat
aggggccagaaaggacataggggtttcactggacttcaaggccttcctggccctcctggt
ccagttggtgaacagggcagtcctggcattccaggtccgtttggtcctcggggtcctcca
ggtccagttggtccttctggaaaagatggaagtcctggtccacttgggccaattgggcct
cctggtgttagggggactgtgggagaagctggacctgagggcccaccaggtgagcctggt
cctcctggccctccagggcctccaggccacctcactgctgccattggtgacatcatggga
cactatgacgatgccatggcggatccactaccggagttcactgaagatgaagcagcccct
gatgaccataacaaaacagacccaggagtccacgccacgctgaagtccctgagcagccag
atcgagaccatgcgcagccccgatggctccaagaaacacccagcgcggacctgtgatgac
ctgaagctgtgccacccctccaagaggagcggtgaatattggattgatcctaaccaagga
tgtgttgaagatgctataaaggtttactgcaacatggaaactggggagacctgcatttct
gccaacccatctactgtgccccgcaaaacatggtgggccagcaagtcctctgacttaaag
cctgtttggtatggccttgatatgaacaggggatcacagtttgtgtatggggatacagct
gtcactcagatgacattcctgcgcctcctgtccaaggaagcttcccagaacatcacctac
ctttgtaaaaacagtgttgggtacatggatgaccagatgaagaacctgaaaaaagctgtg
attctgaaaggggccaatgacctggagatcaaggcagagggaaacagccgcttcagatac
actgttctgcacgacagctgttctaaacgtaatgggaatgtgggcaagactgtttttgag
tacagaacgcagaatgtggcacgcttaccgatcatcgatattgcaccagtggacattggc
agtaccgaccaggaatttggaattgaaattgggccagtttgctttgtgtaa
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