Parus major (Great Tit): 107207921
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Entry
107207921 CDS
T04864
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
pmaj
Parus major (Great Tit)
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pmaj03000
]
107207921 (RC3H1)
04121 Ubiquitin system [BR:
pmaj04121
]
107207921 (RC3H1)
Transcription factors [BR:
pmaj03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
107207921 (RC3H1)
Ubiquitin system [BR:
pmaj04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
107207921 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-CCCH_UNK
zf-C3HC4_2
zf_CCCH_4
zf-CCCH_4
FYVE
zf-RING_10
PaaA_PaaC
Vesi_VP2
Baculo_IE-1
zf-RING_4
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
107207921
NCBI-ProteinID:
XP_015491159
Ensembl:
ENSPMJG00000019236
LinkDB
All DBs
Position
8:complement(7117840..7175779)
Genome browser
AA seq
1130 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLRSGAEDTKHYEEGKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGTDQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSGAILSEE
GGVDLPNRKTSALPNGIVSTGSTVTQLISRGTDSSYETALKPGKMDHLSSSAPGSPPDLL
ESVPKSSISALPVNPHPVPARVPADLPSVSVTKQLQMVPRGSQLYSAQQADIFYQDPRGA
APSFEPAPYQQGVYYPTQSMSRFVRPPPSATEPGIPYLEHYGPYLPERVVSPQYPQPQGY
PTLAQPMYPPHYDSRRVYPPVQPYQREDVVRGSPVPIDIPQAAVPLYVPESRDRYQQTEA
YCAVAPHLGQIRPSCHRPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPTLPHPFHPE
EIFVFVQYLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAARSVEMANV
DSKAMREQRLDMQRRAAETGDDDLIPFGDRPTVSRFGAISRTSKAVYQNSGPMQALAVQG
AATKSIISDYSPYETHSGWGGSPYSPHQNIPSQGRFNDRERLSMSDVAGHGKQLPSAERE
QQLRMELQQVDHQISQQTQMRGLEAVSNRLLLQREVTTLAGQPQPPPPPPKWPGMISSEQ
LSLELHQVEREIGKRTRELSMESQSSLDMKNKLGTAKQTENGQLEPQNKVPAEDLTLTFS
SDVPNGSALTQDNIGLLSNNMASLSLSEDPKGGGDGHDSQRVGVTPTSAP
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggattttctctcctgcccgatttgcacacagact
ttcgacgaaactatccggaagcccatcagcttgggttgtggccacactgtctgcaagatg
tgcctcaacaagctccaccgtaaggcatgtccctttgaccagaccactatcaacacagac
attgaactccttcctgtgaactcagccttgctgcaacttgtgggtgctcaggttcctgag
cagcagccaattactttacgcagtggagctgaagatactaagcattatgaggaaggcaag
aaatgtgtggaagaactggcattgtacctcaaaccactcagcagtgcaagaggtgtgggt
cttaacagtactactcagagtgtgctgagtcgtcccatgcagaggaaacttgtgacatta
gtccattgccagctggtggaggaggaagggcggatcagagccatgcgtgcagcacggtca
ctgggtgaaagaacagtcacagagctcattcttcagcatcaaaaccctcagcagctttcc
tccaacctctgggctgcagtgagagccagagggtgccagttccttgggccagcaatgcaa
gaggaggctttaaagctagttctgctggctttggaagatggatctgctctgtcacgaaag
gtcttggttctctttgtggtgcaaagactggagccgcgattccctcaggcttccaaaact
agcattgggcatgttgtccagctcctttacagagcctcatgcttcaaggtgaccaagcga
gatgaagattcttccctgatgcaactgaaggaggaatttcggacttatgaagctctgaga
agggaacatgattcccagatagttcaaatagctatggaagcaggtttgcgcattgcacca
gaccagtggtcctctctgttatatggagaccagtctcacaaatcccacatgcagagtatc
atcgacaagttgcagaccccagcctcatttgcacagagtgttcaggaattaactattgct
cttcagaggaccggagatccagctaacttgaatcgtcttcgacctcacctagagcttcta
gcaaatattgatccaagtccagatgctccacctccaacatgggaacaactggaaaatggg
ctagttgctgtgaggactgtagttcatggcttagttgattatatccagaatcacagcaaa
aaaggaacagatcaacaacagccccctcagcacagcaagtacaagacatatatgtgccga
gacatgaagcagagaggaggatgtccgcggggggccagctgcaccttcgcacactcacag
gaggagctggaaaaattccgtaaaatgaacaagcgtctcgttcccagaagaccccttagt
gcttccctgggccagctgaatgaggtgggcctgccttcaggagctatcctctcagaggaa
gggggagtggacttgcccaataggaaaacttctgctctgccaaatggaattgtgtcaaca
ggcagcacagtgacgcaactaatttctcgagggactgactccagttatgaaactgccctg
aaaccagggaagatggaccatctgagtagcagtgcccctggatcccctcctgacttgctg
gaatctgttcccaagagctctatttctgccttgccagtgaaccctcatcctgttcctgct
cgggtgccagcagatctgccctcggtgtctgtcaccaagcagttgcagatggtaccacga
gggtctcagttgtacagtgcacagcaagcagatatattttatcaagaccccagaggggcc
gccccatcgtttgagccagcaccctaccaacaaggagtgtactatcccactcagtccatg
tctcgctttgtccgacctcctccatcagcaaccgaaccaggtataccatacttggagcac
tacgggccatatttgccagagcgtgtggtaagcccacagtacccacagccacaggggtac
ccgaccctggcgcagcccatgtacccaccgcactacgacagccgccgcgtgtaccccccc
gtgcagccctaccagcgggaggatgtggtgcggggcagcccagtgcccatcgacatacca
caagcagctgtgcccctctacgtacctgagtccagagacagataccagcaaacagaggct
tattgcgcagtggctccacatcttggtcagatcagaccttcgtgccacaggcctcatccc
agcctggatgaacttcaccgacgaaggaaagagatcatggcccagctggaggagaggaag
gtgatttctccacctccttttgcaccatcaccaaccttgcctcatccttttcacccagag
gagatttttgtttttgtacagtacttggatgaagacctgaaggtagctgggaaatacaaa
gggaatgactacagccagtactctccctggtcctgtgacaccatcggctcctacattgga
accaaagatgcaaaacccaaagatgttgtggcagcaagaagtgtggagatggcgaatgtg
gatagtaaagccatgcgtgagcagcgactggacatgcagcgacgagcagctgagacaggg
gacgatgacctcattccatttggagaccgacctaccgtgtcaagatttggggccatctct
cgtacttccaaagccgtgtaccagaactctgggcccatgcaggccctggcagttcaggga
gctgccaccaaatccatcatttcagactacagtccttacgaaacccacagtggctgggga
ggctctccatattctcctcatcaaaatataccttctcagggtcgtttcaatgacagggag
agactgtccatgtcagatgtggctggtcatgggaagcagttgccctcagctgaacgagag
cagcagctacgcatggaactgcagcaagttgaccatcagatcagccagcagacacaaatg
cggggactggaggctgttagtaacaggctgctgttgcagagagaggtgactaccctggca
ggccaaccacaacccccacccccacctcccaagtggcctgggatgatctcaagtgagcag
ctgagcttggaactgcaccaggtggaaagggaaattgggaagcgaacccgtgagctgagc
atggagagccagtcttcactggatatgaaaaacaagctgggcactgctaaacagacagaa
aatggacaattagaaccacaaaacaaggttccagctgaggaccttacactgacattcagc
agtgatgttccgaatggatcagctttgacccaagacaacattggcctcctgtcaaacaat
atggcatctctcagcctgtcggaggaccctaagggaggaggagatggccatgactcccag
cgagtgggagtgacacccacatctgctccatga
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integrated database retrieval system
