Parus major (Great Tit): 107208667
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Entry
107208667 CDS
T04864
Symbol
ATG16L1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
pmaj
Parus major (Great Tit)
Pathway
pmaj04136
Autophagy - other
pmaj04140
Autophagy - animal
pmaj04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
107208667 (ATG16L1)
04136 Autophagy - other
107208667 (ATG16L1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
107208667 (ATG16L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pmaj04131
]
107208667 (ATG16L1)
03029 Mitochondrial biogenesis [BR:
pmaj03029
]
107208667 (ATG16L1)
Membrane trafficking [BR:
pmaj04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
107208667 (ATG16L1)
Others
Specific organelles associated proteins
Auto phagosome
107208667 (ATG16L1)
Mitochondrial biogenesis [BR:
pmaj03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
107208667 (ATG16L1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG16
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_DCAF4
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_IFT122_1st
eIF2A
Beta-prop_IFT140_1st
NBCH_WD40
WD40_RFWD3
Beta-prop_DCAF12
Beta-prop_HPS5
Beta-prop_NWD2_C
Ge1_WD40
Beta-prop_WDR19_1st
INO80F
HTH_6
WD40_like
Lipoprotein_6
PALB2_WD40
Peptidase_M15_4
HEF_HK
WH_CYT4
Fez1
CCDC93_CC
Motif
Other DBs
NCBI-GeneID:
107208667
NCBI-ProteinID:
XP_015492753
Ensembl:
ENSPMJG00000017098
LinkDB
All DBs
Position
9:6299046..6321402
Genome browser
AA seq
624 aa
AA seq
DB search
MASGLRAAGFPPWKRHIAEELRRRDRLQRQAFEEIIAQYNKLLEKSDLHAVLADKLQAEK
YDMQSRHEISPGHDSTWNDAQLQELAQLKIKHQEELTELHKKRGELAQSVIDLNNQMQQK
DKEMQMNEAKIAEYLQKISELETECQELRSKLQDLERANQTLKDEYDALQITFNALEEKL
RKTTEDNQELVSRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEPRDDD
IEVLADETSDTAEETSPVRAVSRTSSKRLSQPAGGLLDSITNIFGLSESPLLGHQSSDTA
RRRSVSSFPAPQDNAEPHPGASKEVRVPTTAICVFDAHDGEVNAVQFSPGSRLLATGGMD
RRVKLWEVLGDRCEPKGSLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDNRLRHT
LTGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVM
SGHFDKKIRFWDIRTESIVKELELLGRITALDLNPERTELLTCSRDDLLKIIDLRVSAVK
QTFSAQGFKCGSDWTRVVFSPDGNYVAAGSADGALYIWNVLTGKLERTLAKHHSSSINAV
TWSPAGAHVVTVDKGNKAVLWSEF
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcggggctgcgcgctgccggcttccccccatggaagcggcacatcgcagaggag
ctgcggcggcgggaccggttgcagcggcaggctttcgaggagatcatcgcccagtataac
aagctactggagaagtcagaccttcatgcagtgctggctgataagcttcaagcagaaaaa
tatgacatgcagagcagacatgagatcagcccaggacatgatagcacatggaatgacgct
cagctgcaggaactggcccagctgaagataaagcaccaagaggagctgactgagctgcac
aagaagcgtggagagctggcccagtctgtaatcgatctgaacaaccaaatgcagcagaag
gacaaagagatgcagatgaacgaagccaagattgcagagtatttgcaaaagatttctgaa
ctggaaacagagtgccaagaattgcgtagcaaactgcaggatcttgagcgagctaatcag
acactgaaagatgaatatgatgctctccagatcaccttcaatgccttggaggagaagtta
aggaaaactactgaagacaaccaggagctagtctcacgttggatggcagagaaagcacaa
gaagccaatcgtttgaatgcagaaaatgaaaaggattcaaggagacgccaggccaggctg
cagaaggagctggcagaagctgccaaagagcccttgcctgttgagcccagggatgatgat
atcgaagtgcttgcagatgaaacctctgacacagctgaggaaacctctccagtgcgagct
gtcagccggacgtccagtaagcgactctcccagccagctggaggccttctggactctatc
actaatatctttggtctgtctgagtctccccttttgggacatcagtcttctgatactgcc
aggaggcgttctgtgtcctcattccctgcaccccaggataatgcagagccacatccaggt
gccagtaaagaagtgagagtgcccactactgccatatgtgtctttgatgcacatgatggg
gaggtgaatgcggtgcagttcagccctggctcccggttactagcaacaggaggcatggac
cggagggttaagctttgggaagtcttgggagataggtgtgagcccaaaggttccctctct
ggtagtaatgctgggattacaagcatagaatttgatagtgctggttcttacctcttagca
gcttcaaatgactttgccagcagaatctggacagttgatgacaatcgattacggcacacc
ctgacaggtcacagtggtaaagttctgtcagccaagttcttgctggacaatgcacgtatt
gtttcgggaagtcacgaccggaccctcaagctctgggatctccgcagcaaagtttgtata
aaaacagtttttgcaggatctagctgcaatgacatcgtgtgcactgagcagtgtgtaatg
agtggacattttgataagaaaattcgtttctgggacatcaggactgaaagcatagtaaaa
gaactggagttgcttggaagaatcacggctctggacctgaatccagagcgaacagagctt
ctgacctgttcccgtgatgatctgctcaagatcattgatctgcgggtcagtgctgtcaag
cagacgttcagtgcccagggattcaaatgtggctctgactggacaagagttgtgttcagc
cctgatggtaactatgtggctgctggctcagctgatggggccctctacatctggaatgtg
cttactgggaaattggagaggacacttgcaaagcatcacagttcttctatcaatgcagtc
acgtggtccccagcaggtgcccatgtggtcactgtggacaaaggaaacaaggctgtgctg
tggtctgagttttga
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