Parus major (Great Tit): 107208674
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Entry
107208674 CDS
T04864
Symbol
VPS8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
pmaj
Parus major (Great Tit)
Pathway
pmaj04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
107208674 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pmaj04131
]
107208674 (VPS8)
Membrane trafficking [BR:
pmaj04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
107208674 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
TPR_VPS8_2
Beta-prop_WDR36-Utp21_1st
zf-RING_Vps41
WD40_CDC20-Fz
zf-RING_11
Clathrin
zf_RING_Vps8_fungal
TPR_Vps41
zf-RING_2
zf-RING_UBOX
Beta-prop_WDR5
Beta-prop_HPS5
WDR55
Beta-prop_WDR3_1st
ANAPC4_WD40
Motif
Other DBs
NCBI-GeneID:
107208674
NCBI-ProteinID:
XP_015492791
Ensembl:
ENSPMJG00000016581
LinkDB
All DBs
Position
9:complement(5615429..5687710)
Genome browser
AA seq
1391 aa
AA seq
DB search
MAAALEPAEAEPCPDPPAHRLSVAELDRELDSRSELIDDKEFDIPQVDTPPTLESILNET
DDEEESFILEDPFLLNIDNTDTHSYDTSSVASSDSGDRTHLKRKKKLPDSLSLHGSVIRL
SLLKGISAQIVSAADKVDAGLPTAIAASNLIAVGTSHGLALIFGKDQNQALRLCLGSTAV
GAQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHPPGTAILHIKFTDD
PTLAICNDSGGSVFELSFKRVMGVRTCESRCLFSGSKGEVCCIEPLHAKVDLRDHPITQY
SLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAMQNSVNPMLAFCRGD
VVYFLLVKRDDSGAIHVTKQRQLHLHYDLINFTWINSRTAVLLDSVEKLHVIDRQTQEEL
ETIEISEVQLVYNSSHFKSLATGGNVSEALALVGEKACYQSISSCGGQVFYLGTKSVHVM
TLRSWRERVDHLLKQERLTDALALAWSFYEGKAKAVVGLTGDTNKRKAVIADRMVEILLH
YTDRALKKCPDQGKIQVMEQHFQDVVPVIVDYCLLLQRMDLLFNQIYDKMSENSVAKGIF
LECLEPYILSDKLMGITAQVMKDLLLHFQDKNRLENLEACIVHMDITSLDIQQVVLLCWE
NRLYDAMIYVYNSGMNDFISPMEKLFKVIAPPLNAGKSLTDEQVVMGNKLLVYISCCLAG
RAYPLGDIPEDLVPLVKNQVFEFLIRLHSAEGSVDEEVYPYVRTLLHFDTREFLNVLALT
FEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQLAKPNNTLFVNRTL
FDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIQMAEKAEFYQICEFMYER
QLRYDKIIGCYLRDPLRKEEVFNYIHNILSMPGYSAEEKQLVWQKALDHIEELLVLSPGK
AADLAAIHFSEQIESIISNLQDKFLLFQFLRSLLDPREGINQDLLHLPPCITEQFIELLS
QYSPDQVLETLKVLEYCRLEETIQITQKHQLHEASSYLLEKKGDIHGAFLVMLERLQSKL
LLLTQDDGSSVEPSLLENIEDTLMKTIALCQRNSHSLDQQQREALWFPLLEAMMSPQKSS
GSSQCPFSESLKSLTMQVLNNMAAFIALPSILQRILQDPVYGKGKLGEIQGLVLGMLDTF
NYEQTLLETTTSLLNHDLHWSLCNLRASVTRGLTPKQDYCCICLQQYKRRQETADEIIVF
SCGHLYHSLCLLSKECGVVTKGLMRWMCYKCNSSNKGGKLSENFSELKKGTAASLAQMSS
ESVLDPQQIQAFDQLCRLNRGTSRLALLTELARGGDKHGLLSVSHGDPATSSVFQNENFQ
LHLTPPPLAEE
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atggctgcggccctcgagccggcggaggccgagccgtgcccggatccgcccgcgcaccgg
ctgagcgtagcggagctcgaccgtgagctggactctcggagcgagctgattgacgacaaa
gaattcgacattcctcaagttgatacccctccaacgctggagagcatcctaaatgagact
gatgatgaagaagagtctttcattttggaggatccttttctcttgaacattgataacaca
gatacacactcctatgacacctcttctgtggccagctctgacagtggggataggacacac
ctgaaaaggaagaaaaaactcccagattctctctcactccatggatcagtgatacggctc
tcactcctgaaaggaatttctgcccaaatagtctctgcagcagacaaagtggatgctggc
ttgccaactgcaattgcagcatcaaatctgatagcagtggggacttcccatgggttagca
ctgatatttggcaaagatcagaaccaggctctccggctgtgtctgggcagcaccgcagtt
ggggcccagtacggggccatctctgctctcagcatcaacaatgactgttccaggctgctc
tgtggctttgcaaaaggacagattaccatgtgggatctggccagtgggaagttgctgcga
tcaataacagatgcccaccctccaggaacagccattttgcacatcaagtttacagatgat
ccgactcttgcaatttgcaatgacagcggaggctccgtgtttgaactgtcatttaagagg
gttatgggagtgaggacgtgtgagtctcggtgtctcttcagtggctccaagggggaagtt
tgctgtattgagccattacatgcaaaggttgatttgagagaccatcctatcacccagtat
tcactgctggccatggcctccctcactaagatccttgttattggcctgaagccatctctg
aaagtgtggatgacctttccctatggtcgtatggacccctcgagtgtccctctgctagcg
tggcactttgtggccatgcagaactcggtgaaccccatgcttgccttctgtcgaggagat
gtcgtgtactttcttctggtcaagagggatgatagtggtgcaatacatgtcacgaagcag
aggcagcttcatctgcactacgatctcatcaacttcacttggatcaactcacggacagca
gtcctgctggacagtgtggagaagctgcacgtcatagaccgtcagactcaggaggagctg
gagaccattgagatctcagaggttcagctggtctacaacagcagccacttcaagtctctg
gccacggggggcaatgtcagcgaggccttggcactggttggagagaaagcttgttaccag
tccatcagcagctgtggtggtcaggtcttttaccttggaactaaatctgttcatgttatg
acattgagaagctggagagagagagtggaccaccttctgaaacaagaacgtctcacagat
gccctggctcttgcttggtccttttatgaaggtaaagcaaaggctgtagtaggcttgact
ggggacacgaacaagaggaaagcagtcattgctgacagaatggtagaaatccttctccat
tacactgatcgggctctgaagaaatgtcctgaccaaggaaaaatccaggttatggagcag
cactttcaggatgtggtgcctgtcatcgtggattactgtctcctgctacagcgcatggat
ctattatttaaccagatatatgacaagatgagtgagaactctgtagccaaaggcatcttt
ctagagtgcttggagccatatatcttgagtgataagctgatgggaatcacagctcaagtg
atgaaagacttgctgcttcacttccaagacaagaacaggttggaaaacttggaagcctgc
attgtgcatatggatatcaccagtttagacatacagcaggtggttctcctgtgctgggaa
aaccgcctgtatgatgccatgatctatgtctacaacagcgggatgaacgacttcatcagt
cccatggagaagctgttcaaagtcattgctcctccactgaatgctggaaagtctctcaca
gatgagcaggtggtgatgggcaacaagctgcttgtgtatataagctgctgcttggcaggc
cgtgcatatccgttgggtgatattcctgaagatctggtacctttggtgaaaaatcaggtg
tttgagtttctgatccggctgcactcagctgagggatctgtggatgaggaggtgtatccc
tatgttcggaccctgctgcactttgacacacgggaattcctcaatgtgctggctttgact
tttgaagactttaagaatgataagcaagctgtggagtatcaacagagaattgtggacatt
cttctgaaagtcatggtggagaattctgacttcaccccatcacaggttggctgtcttttc
accttccttgcccggcagctcgccaagccaaacaacaccttgtttgtcaacaggacactc
tttgaccaggtgctggagttcctgtgcagcccagatgacgactcccggcattccgagagg
cagcaggtccttttagagctgctccaggcaggagggatcgtgcagtttgaagagagccgc
cttatccaaatggcagagaaggctgaattctatcagatttgtgagttcatgtatgaacgg
cagcttcgttatgacaaaatcattggctgttacctgcgggatcccctgaggaaggaagaa
gttttcaactacatccacaacatcctgtccatgcctggctacagtgctgaggagaagcag
ctggtgtggcagaaagctttggaccatatagaggagctgctggtgctgagcccaggtaaa
gcagctgacctggcagccattcacttcagtgagcagatcgagagcatcatctcaaacctg
caggacaagttcttgctcttccagttcctgaggagtctccttgatccaagagaaggcatt
aaccaagacctgctacacctcccaccatgtatcactgagcagttcattgagctgctctct
cagtacagtcctgaccaggttttggagacactcaaagttctggaatactgcagactggag
gaaaccatccagataacccaaaaacatcagctccatgaggcttcttcgtatttgctagag
aagaagggagatatccatggagcctttttggttatgcttgagcgattgcagagcaagttg
ctgttgcttactcaagatgatggaagctcagttgaaccgtccttgctagaaaacattgaa
gatactttaatgaaaacaattgctctttgccagaggaattcacatagtttagaccagcaa
cagcgagaggccctctggtttcccctgcttgaggccatgatgtccccacagaaatcttct
ggttcatcgcagtgtccgttctctgaatctttgaagagtttgacaatgcaagtgctgaac
aacatggctgcatttattgctcttccctcaatcctgcagaggattctccaggatccagtt
tatggaaaagggaaacttggagaaattcaaggacttgttctgggaatgcttgacactttt
aactatgaacaaacccttctagagacaaccacgagccttttaaaccacgatcttcactgg
tccctatgtaacctgagagcctctgtcaccagaggccttaccccaaagcaggattactgc
tgcatctgtctccagcagtacaaaagaaggcaagaaactgctgatgaaatcattgttttc
agctgtggccatttgtaccactcactgtgcctgctgagcaaggagtgtggggtggtcacc
aagggcctcatgaggtggatgtgctacaaatgcaactcgagcaacaagggagggaagctg
agtgagaacttctcagagctgaaaaaagggactgcagcatccctggcacagatgagttca
gagtctgtgttggatcctcagcaaatccaagcttttgaccagctctgccgactgaaccga
ggcacctcccgactggctctcctgacggagctggcgcgtggaggtgacaagcacgggctg
ctcagtgtttcccacggggacccagccaccagcagtgtcttccagaatgagaacttccag
ctgcacctgactccccctccactggctgaagagtag
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integrated database retrieval system
