KEGG   Parus major (Great Tit): 107208723
Entry
107208723         CDS       T04864                                 
Symbol
RFC4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
pmaj  Parus major (Great Tit)
Pathway
pmaj03030  DNA replication
pmaj03410  Base excision repair
pmaj03420  Nucleotide excision repair
pmaj03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pmaj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    107208723 (RFC4)
   03410 Base excision repair
    107208723 (RFC4)
   03420 Nucleotide excision repair
    107208723 (RFC4)
   03430 Mismatch repair
    107208723 (RFC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pmaj03032]
    107208723 (RFC4)
   03036 Chromosome and associated proteins [BR:pmaj03036]
    107208723 (RFC4)
   03400 DNA repair and recombination proteins [BR:pmaj03400]
    107208723 (RFC4)
DNA replication proteins [BR:pmaj03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    107208723 (RFC4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    107208723 (RFC4)
Chromosome and associated proteins [BR:pmaj03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    107208723 (RFC4)
DNA repair and recombination proteins [BR:pmaj03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     107208723 (RFC4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    107208723 (RFC4)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_assoc_2 Rad17 AAA_16 AAA_11 AAA_30 AAA_22 AAA_24 Mg_chelatase DUF815 SLFN-g3_helicase AAA_14 RuvB_N AAA_19 AAA_5 TIP49_C AAA_28 AAA_23 DNAX_ATPase_lid ResIII AAA_7
Other DBs
NCBI-GeneID: 107208723
NCBI-ProteinID: XP_015492900
Ensembl: ENSPMJG00000001751
LinkDB
Position
9:complement(17010727..17022787)
AA seq 362 aa
MQAFLKGPASISTKPVAAKEKSAAGSSGEGKRTKPIPWVEKYRPKNVDEVAFQDEVVAVL
KKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPDLFRQRVLELNASDERGIQVIREK
VKAFAQLTASGSRSDGKMCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNY
ISRIIEPLTSRCSKFRFKPLSDSIQQQRLLDVSEKEHVKISNEAVSYLVKVSEGDLRKAI
TFLQSATRLMGGKEITEKIITEIAGVIPKETIDELLLGCQSGSFEKLETLAKNLINEGFA
VAQLVNQLHDTIVESEDYSDKQKSAIVEKLAEVDKCLADGADEFLQLMSLCALVMQQLTQ
NT
NT seq 1089 nt   +upstreamnt  +downstreamnt
atgcaggccttcctcaagggcccggcctctatcagcaccaagcccgtcgctgccaaggaa
aagagcgcggccgggagcagcggggagggcaagaggaccaaacccatcccctgggtggag
aaatatcgtcccaaaaatgtggatgaagttgccttccaggatgaagttgtagctgtgctg
aagaagtccctggaaggtgctgatcttcccaatctgttgttctatggcccacctggaact
ggaaagacttccactattttagcagctgcaagagaactgtttgggcctgatttattccga
caaagagtccttgagttaaatgcttctgatgagcgtgggatacaagtgattcgggaaaaa
gtgaaggcttttgctcagctaacggcatctggaagccgttcagatggtaaaatgtgtcct
ccttttaaaattgtgatcctggatgaagcagactctatgacttcagcagcccaggcagcc
ttaagacgcacaatggagaaagaatctaaaacaacacgtttctgtcttatttgtaactac
atcagcagaataattgaacctttaacatctcgatgctccaaattccgcttcaagcctttg
tctgacagtatccaacagcagaggctgttggatgtttctgagaaggaacatgtgaaaatc
agtaatgaggcagtatcgtacctggtgaaagtgtcagaaggagacttaagaaaagcaatt
acttttcttcaaagtgccactcgcttaatgggtgggaaggagatcacagagaagataatc
actgaaattgctggggtcatccctaaagaaacaattgatgaactgctattgggatgccag
agtggttcttttgagaaactggaaacactggcaaagaatctcatcaatgaggggtttgct
gttgctcagcttgtaaaccagctgcatgacaccattgtggagagtgaagattacagtgac
aaacagaaatctgccatagttgagaaacttgcagaagtggacaaatgccttgcagatggt
gctgatgaattcttgcagctgatgagtctttgtgcccttgtgatgcagcagctcacacag
aacacctga

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