Parus major (Great Tit): 107208754
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Entry
107208754 CDS
T04864
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
pmaj
Parus major (Great Tit)
Pathway
pmaj04382
Cornified envelope formation
pmaj04510
Focal adhesion
pmaj04512
ECM-receptor interaction
pmaj04518
Integrin signaling
pmaj04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107208754 (COL4A4)
04518 Integrin signaling
107208754 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107208754 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
107208754 (COL4A4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
107208754 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pmaj04147
]
107208754 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
pmaj00536
]
107208754 (COL4A4)
Exosome [BR:
pmaj04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
107208754 (COL4A4)
Glycosaminoglycan binding proteins [BR:
pmaj00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107208754 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
107208754
NCBI-ProteinID:
XP_015493015
LinkDB
All DBs
Position
9:complement(9385985..9449259)
Genome browser
AA seq
1681 aa
AA seq
DB search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NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atggcattaacaaaggattcatttgaacggattaagtggcttatcacagctgcctggtgg
ctgctgattgttttttcagctcaaggaattgatgggggaggatatgcttatattgatcca
tgtgggggacaggattgttcagtttgtcggtgctttccagagaaaggatcaaggggtcag
cctggtgatctgggagctcaaggtccaattggggccttgggatctacaggaccagctggt
ctgccaggggagaaaggacagagaggtgagaatgggaggcctgggccagctggagaaaaa
ggtgataagggcccaactggagtcccaggatttcctggtttagatggtgttcctggcctc
ccaggaatggaaggacccagaggcaagcatggtttggatggctgcaatggctcaagggga
gacccaggatttccaggagaaaacggttatatgggaccaagcggtccttatggaattcca
gggcagaaaggagaaaaaggaaattcagtgtatatttcacattttggaaaaggacttcca
ggagagagaggtgatcctggaccccctggcatgcctggacctagagggtcaagaggtaca
acgggcccatctggatacccaggccatccaggcttgcctggtattccaggttaccctggt
ttaccaggtgaacagggaaatccagggattggagtggatggacaaaagggggagccgggc
gacattggactgcctgggccgcctgggttaccgctgttagttggacctcctggagctcag
ctgttcaaaggacaaaagggccaaaaaggattacctggggtaacaggagacagagggcca
cgtggacccaaaggcatacttgggagaggagaaaagggtgaaaaaggccttcctgggttc
cctggattgcggggtcatcctggttcttatggacctgcaggttttcctggaatgaagggt
gaaacaggatttgctggttttcctggacaacctggctatccaggcatacagggggatcca
ggagagaaagggcccccaggtcctcctggagctgttggaactccactgcctcctgtaaaa
ggtccacgaggagatcctgggtttccaggtcctgttggtgaaatggggtcagttggacca
attggtccttcaggccttgtaggaagaccaggatacgatggaacaagtcttcctggactg
ccaggagtaagtggggaaccaggacctcaaggttttcaaggggaccctggtttgcctgga
ataggtgaattaatcccaggaagaccaggatttcctggaccaccaggcctaccagggcag
ccaggaagacaaggcttacctggactacccagtgtaatctgtactgacagagggatccct
ggagaacctggagcaaaaggtcagataggccttccaggaagaaaaggtgcaaaaggagag
aagggaagtcaaggcctctgctcatgtagtgctggtcctcctggtccccgtggcgtgcaa
ggacctccaggtactcaaggaaggaaaggacaaatgggataccctggaagacatggagaa
aagggtgacccaggcttatctggtgcagtgggaccaccagggctccctgggactcctggt
tcagctggacagcatggggaaaaaggagagaggggtgatccaggaagagttagaataaaa
ggattaaaaggtgaaagaggacctgctgggcttccaggatttccaggccaaagaggtctt
gatggcagagatggggaattaggattaccaggggaaaaaggagatgagggtgattctgga
gtagcaattccgggtgagaaaggattccctgggctcccaggacctcctggggtaaaaggc
cagatgggattgcctggtttggggcttcctgggcctccaggagccagaggtagccccgga
gactttggtgatatgggtgatgttgggccacctggtccaaaaggccagaaaggtgaaact
gtctgcattacatcaccatatcctggaaatccaggtcccccaggttttaaaggtgttcaa
ggacaaaagggtttaaaaggactccctgggcatcctggaccaaatggctttgatgggcaa
aaaggccatcgaggaaggccaggagcaggaatccctgggccagaaggttttagaggcaca
gctggtgatcctggtgatgaaggtgaaagaggagctacaattgatggcaaaaatggcctt
ccaggtccacctggcacagatggtcagaaaggtctcccaggtgacaccacatatggtcct
ccaggaatcccaggcaacaggggactgccaggaccccctggtgctcagggagcaaggggc
aatccaggcattccaggacttcaaggacagcctggcaccccaggatttccaggtgccaaa
ggttttagaggcccagaaggtgatataggagcaccaggctgtccaggcttccctggctca
ccatgtgtcccaggcttaccaggaccacctggactcagaggtgtcatgggcctgccagga
cctcaaggcttgccaggctttaaaggtcagaggggagacaggggcctggctgggccacct
ggaatcaaaggtctcaaaggctctctgggctcacgaggtctcccaggtcctccaggcaca
cgaggtcccccaggacttccaggcaataatggacccattggcttcccaggagaaacagga
agcaaaggcattcaaggaccccagggattcccaggacttccaggaatacaaggcccaatg
ggaatccttggtgtaaaaggtgaagaaggaaaaatgggtctacctgggcctagtggagaa
tgtggagatatgggaataaaaggtgaaagggggccaccaggagacagcggctgtgttaac
ctccgtcttgagaaaggacaaatgggggacccagggtttcctggtgagcatggattgaga
ggtgaaagaggtgaaaaaggtaatagtggtttcagaggagcacgaggatttccagggaag
aacggtgttccaggactgccaggtgaccaaggagacactggagtgatggggtttccagga
tcacggggtttgtctggaccaaagggccttcaaggaattacaggttttcaaggagaacca
ggtgaccagggtgatactggcttaccaggaaacccaggatatccaggactgactggcccc
aaaggatgtaaaggcaagagaggtgatccaactcctctgcttggcacacacggtcagaaa
gggcctccgggagatccaggattgccaggactccgtggatttccaggggagaagggttta
ccaggtatccaaggacagcctggaagaccaggatccaagggtgaccctggatatccaggg
atacctggattaccaggagctacaggtcctcaaggattgccaggagaacctggagaaaaa
gggaaacctggaattttgggacctccaggattgcaagggttgcctggattccaaggcaga
aaaggtcttcctggactgcctggactggatggcttggatggactaaaaggtcaaaagggt
tctgcaggagctccaggtcagagtgagacagggcccccaggatactcaggagaaattgga
ccaaaaggagacagaggtgaacctggatggcctggtatttctattccaggctcccctgga
gaaaggggattcccaggatttccaggtagaagaggacctgttggacccactggacctatg
ggaagatctcctgatagtgcttcccctggtcctccaggtgatcaaggattacctggttta
gacggcatcagaggtgatcctgggaatcctggtcctcctggagagactatctttgtgcgc
ggagatccaggtgataccggcattcgaggggcaccaggtaatcctgggccacgaggacaa
cagggagccaaaggccctccagggagccaaggaagagaaggcccaaagggtcctatgggg
gtccatggcccacagggtccacctggtgcttcaggacaaccaggagaccaaggttttcca
ggaagacctggtcccagaggtcccacaggtttcataggtgaccctggtgaaccaggaaag
atagatgattcatgccctacaatcccagggcctcctggggaagcagggcaaagaggagag
gatggctctgcaggattaccagggccaataggccaccctggaccccaaggcataaaaggt
gaagaaggatcgtgtggcctgccaggtcaagatgggttacctggggcacctggaccacca
ggtgaccaagggagccgaggagagcaaggatatgctgggccacaaggtccacctggccag
actggtgttccaggacaaccagggccccagattagatctgcaagtggattcttgcttgtc
cttcacagtcagtcagacagagaaccactctgcccacaggggatgccaaagttatggact
ggctatagtctgctgtacctggaaggacaagagaaagcccataaccaagatctcggtcta
gcaggatcctgcctgcctgtgtttagcaccatgccatttgcctactgcaacatcaaccag
gtgtgttactatgccagccgcaatgacaagtcctactggctgtccagcgctgccccgctg
ccgatggcgccgctgtccgaggaggagatccggccgtacatcagcagatgtgctgtgtgc
gaggccccagcacaggcagtggcactgcacagccaggaccagtccattcctccctgccca
ctcaactggaggagcctttggataggatactcttttttgatgcacactggatctggtgac
cagggtggtggacagtcccttatgtcacctggaagctgcctggaagacttcagatcagca
ccattcattgagtgccagggccagcggggaacatgtcagttctttgctaatgaatacagt
ttctggctgaccaccgtgatgcctgagttgcagtttgcatcagcccccctgtcagggaca
cttaaagaaggacaggagcagaggaagaaaatcagtcgatgccaggtatgcctgaagcac
ggctaa
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