Parus major (Great Tit): 107208804
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Entry
107208804 CDS
T04864
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
pmaj
Parus major (Great Tit)
Pathway
pmaj03008
Ribosome biogenesis in eukaryotes
pmaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
107208804 (XRN1)
09123 Folding, sorting and degradation
03018 RNA degradation
107208804 (XRN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmaj03019
]
107208804 (XRN1)
03009 Ribosome biogenesis [BR:
pmaj03009
]
107208804 (XRN1)
03016 Transfer RNA biogenesis [BR:
pmaj03016
]
107208804 (XRN1)
03036 Chromosome and associated proteins [BR:
pmaj03036
]
107208804 (XRN1)
Messenger RNA biogenesis [BR:
pmaj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
107208804 (XRN1)
mRNA degradation factors
5'-3' decay
5' exonucleases
107208804 (XRN1)
Ribosome biogenesis [BR:
pmaj03009
]
Eukaryotic type
Pre-60S particles
RNases
107208804 (XRN1)
Transfer RNA biogenesis [BR:
pmaj03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
107208804 (XRN1)
Chromosome and associated proteins [BR:
pmaj03036
]
Eukaryotic type
Gene silencing
piRNA pathway
107208804 (XRN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
107208804
NCBI-ProteinID:
XP_015493170
Ensembl:
ENSPMJG00000018509
LinkDB
All DBs
Position
9:complement(10560651..10601228)
Genome browser
AA seq
1768 aa
AA seq
DB search
MGVPKFYRWISERYPCLSQVLKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISEDKI
FANIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGE
TLPTEARFDSNCITPGTEFMARLNEHLKYFVNMKISTDKSWQGITVYLSGHETPGEGEHK
IMEFIRSEKAKPHHDPNTRHCLYGLDADLIMLGLTSHEAHFALLREEVRFGGKKAQRVCA
PEETTFHLLHLSLMREYIDYEFSPVKDKISFEYDIERIIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYRTYMAILPELGGYINENGYLNLERFEKYLTRLSDFDREHFSEVFVDLKW
FESKVGNKYLNEAAGIAAEEARRNKQKKQKAQENSISLAALEKNEGEVTPKNTLEDEPED
DDLFETEFRQYKRTYYMTKMGVEVVSDAFLADQAECYVQAIQWILHYYYHGVQSWSWYYP
YHYAPYLSDIHNISELKIKFELGKPFMPFEQLLAVLPAASKDLLPKCYQHLMTSQDSPII
EYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLQAMESCNKGLKEEEKQRNTHSACLMYW
YDKDAEFQYLSPWPEKFPAIERCHTRYKTIPLDAWHVEITHNKITKINKNALYFCGFPTL
KHIKHKFYLKKSGVQVFQQSSHGENMMLEIIVDGNSKDQMVENVASSVLGKRVFVNWPHL
EEARVVAVSDGETKFYLEEPHGTQKLYMGNAVPPTKVAYVGEKEQSMWVKEIQGISEQYQ
RRKGIIIHETSVVVYAQLLTGNRYQLNQNGEVYLEKQWSKQVLPFVYQTVVKDIKAFDSR
FSNIKTLDDLFPPGSTAFMLGSPYYGCMGEVHDSHDVIPEGRIRVVFNIPCEPQLDTLIQ
NQHKYSVKYNPAYILASRLGVSGYLVSRFTGSIFIGRGSKKNPHGDHKANVGLNLKFNKK
NEEVPGYTKKVGNEWMYSSAVEQLLAEYLERVPELFNYVAKNSQEDICYEDDIWPGEDEN
GAEKVQEIVAWLKAHPVSALSRSSCDLQILDAAIVEKIEEEIEKCKQRKSNKKVRVTVKP
HLLYRPLEQQKGVVPDRDAEYRLFDRVVNVRENFSVPVGLRGTIIGIKGATRETDVLFEV
LFDEEFLGGLTIRCSPARGYRLPSSALINLSHGSRSEMGNQKLMAIVKPQPAVNNYNSYA
SDLSSVCSQKVHLGGLNHSPRSLFVPTQQLNGRQHYNLRAENQGNSNSPQKGSFLSGNQK
NKAQSKQDDEFCSIWQSLQSSGKSHHVQQNMHEKGAVLPQEIKLGTGHQFYKPGFNDSSF
KCQQRKQEPYKKFKEDSKVTRGESQPHNKMSNQQNFTGVNKYNVKLLKRNGSPNMPLIQK
AAVDGPCTGGKKDNELESLLASLKISKENEVQTYSKEARATNEEHLSPQSFAMKGTQMLK
EILKIDGSDLQTKNEVKSQINDVPAPSSRQDCHGAALQFRPTKKMAAYMNKHSPGGPQNT
PAIETGGHPFTCPQPALSTVSELSRICSLLGMAQPDFSFLKTPQTMTVCHIKLSNGLLVH
GPQCHSEAEAKEKAALFALQRLGSIGVNFASPPPPPVFPNYQPLGVPVPPGSIPPVFAQP
PANMMPPSSHMFGPMSWGTPVPKHYYPGSYPGNVSLSGTIPVGSHNQFIPLQVTKKRAAS
KKNFELKEFQSSPQAAPLKNEQPMSSDHIQQDSSSAPLKSPQAAQSTVSFQDNVATPSVP
HNKSTPNTSSKRKPRKLAVNFGAPKSSE
NT seq
5307 nt
NT seq
+upstream
nt +downstream
nt
atgggggtccccaagttctaccggtggatctcggagcgatacccctgcctcagccaggtg
ctgaaggagcatcagattccagaatttgacaacttatacctggacatgaatggcataata
catcagtgttcccatccaaatgatgacgatgtccacttcagaatctcagaagataagatt
tttgccaatatttttcattatttggaagtactgtttcgcattattaaaccaagaaaggtt
ttcttcatggcagttgatggagtagctccaagagcaaaaatgaatcagcagcgcgggaga
cgttttagatcagcaaaagaggcagaggataaaataaaaaaggcattggaaaagggagaa
accctccctacagaagccagatttgactccaactgtattacaccaggaactgaattcatg
gccagattgaatgagcatcttaaatattttgtaaatatgaagatttccacagacaaatcc
tggcaaggaataacagtctacttatcgggccatgagaccccaggggaaggtgagcataaa
attatggagttcatcagatcagaaaaagcaaagccccatcatgatccaaacacaagacac
tgtctctatggcttagatgctgacttgataatgctgggattaacaagtcatgaggcacac
tttgcgctcttaagagaagaagtcagatttggtggtaaaaaggctcaaagagtatgtgca
ccagaggaaaccacatttcatttactgcacttatcactgatgagagaatatatcgattat
gaattttccccagtaaaagacaagatttcttttgaatatgatattgaaaggataatagat
gattggatcttaatgggtttccttgtaggaaatgattttattcctcatctacctcattta
cacattaatcatgatgcactgccgctactttatagaacatacatggctatcttgccagaa
ctgggaggttacatcaatgagaatgggtatctgaatttagaacgttttgagaaatatctc
acaagattgtcagattttgatcgtgaacacttcagtgaagtctttgttgacctaaagtgg
tttgaaagtaaagtaggcaataaatacctcaatgaggcagctgggattgcagcagaggaa
gccagaagaaataaacaaaagaaacaaaaggctcaggaaaattctatatctttggctgct
ttagaaaaaaatgaaggcgaagtgacccctaaaaacacattggaagatgagccagaagat
gatgatctgtttgaaactgagtttaggcaatacaaaagaacttactacatgactaaaatg
ggtgtagaagtagtgtctgatgccttcttggctgatcaagctgaatgttatgtccaggca
attcaatggattttgcattattattaccatggagttcagtcatggagctggtattaccct
tatcattatgcaccttacctgtcagatattcacaacatcagtgaactcaaaatcaaattt
gaacttggaaaacctttcatgccatttgaacagcttcttgctgtacttccagcagctagc
aaagatctgctgcctaaatgttaccagcatttgatgactagtcaagactctcctattata
gaatattatccacctgattttaaaactgacctaaacggtaaacagcaggaatgggaagct
gtagtattaatcccgtttattgatgagaaacgactgctgcaggccatggaatcctgtaat
aagggcctaaaagaagaggagaaacaaagaaacactcacagtgcttgcttaatgtactgg
tatgacaaagatgctgagttccagtacctgtcaccatggccagagaaattccctgcgata
gaacgatgtcacacgaggtataaaacaatacctttggatgcttggcatgtggaaataacc
cacaataagataactaaaatcaacaagaatgcattatatttttgtggatttcctacttta
aagcacattaaacataagttctatcttaaaaaaagtggtgtgcaagtgtttcagcaaagc
agccatggagagaacatgatgttggaaatcatagttgatgggaactcaaaagaccagatg
gtagaaaacgttgccagctctgtacttggaaagcgagtttttgttaactggccccacctt
gaagaagccagagttgttgcagtgtcagatggagaaactaagttttatttggaagaacca
catggcacacagaagctttacatgggaaatgcagtgcccccaactaaagtggcttatgtt
ggagaaaaggagcaaagcatgtgggtaaaagaaattcaaggcatttcagagcagtaccag
agaaggaaaggaataattattcatgaaacatcagtagttgtatatgctcagttactcact
ggtaatagataccaactaaaccaaaatggagaagtttatttggagaagcagtggtctaaa
caagttcttccttttgtttaccaaacagttgtcaaggatatcaaagcctttgactctcgt
ttttcaaacatcaaaactttggatgatttgtttcctcctggaagtacagccttcatgctg
ggatctccttactatggctgcatgggagaagttcatgattcacacgatgtgatcccagaa
ggtagaatccgggtagtttttaatattccatgtgaaccccagcttgatactttaatacag
aaccagcataaatattcagtgaaatacaatcctgcatatattttggccagccgtcttgga
gtaagtggatatcttgtctccagatttacagggagtatctttattggaagaggatcaaag
aagaatcctcatggtgatcacaaagcaaatgtggggctaaacctgaagttcaataagaaa
aatgaagaagttcctggctatactaagaaagttggaaacgaatggatgtattcttctgca
gtagagcaactacttgctgagtatttagaaagggtgcctgaactatttaattatgtagcc
aagaacagccaggaagatatttgctacgaagatgacatttggcctggagaggatgaaaat
ggagctgagaaagtgcaagaaattgttgcctggttaaaagcacatcctgtgtctgctttg
tctcgctcatcttgtgacttgcaaattttggatgcagctattgttgagaaaattgaagaa
gaaatagagaaatgcaagcagagaaaaagcaacaagaaggtgcgagtaactgtgaaaccc
catttgctgtacagaccattagaacagcagaagggggttgttccagatcgagatgcagag
tacaggctgtttgaccgtgttgtcaatgtaagagagaacttttctgttccagttggtcta
cgaggcaccattattggaattaaaggagctactagagaaacagatgtgctctttgaagtt
ttatttgatgaagaattccttggaggcctcactataaggtgctcacctgccagaggttat
cgcctgccctcaagtgccttaattaacctgtctcatggcagtcggtcagaaatgggaaat
caaaagctgatggccatagttaaacctcagccagcagtgaataactacaactcatatgca
tctgatctgtcatctgtatgctcacaaaaagtgcacctgggaggcctcaaccattctcct
cgctccctttttgttcctactcaacaactgaatggaagacagcattacaatctcagggct
gaaaatcagggcaactcaaactcaccccagaaaggatcatttctgagtggcaatcagaaa
aataaagcacagagtaagcaagatgatgaattctgcagcatatggcagtcattgcagagt
tctgggaagtctcatcacgttcaacaaaacatgcatgagaagggtgcagttctacctcag
gaaatcaagctgggaactggccatcagttttataagccaggcttcaatgacagcagcttt
aaatgccagcaaagaaaacaggagccttataaaaaatttaaagaagattccaaagttaca
agaggtgaaagtcaaccacataataaaatgtcaaaccaacagaatttcacaggtgtgaat
aagtacaatgtcaaacttttgaagaggaatggaagtcccaacatgcctttaattcagaag
gctgcagttgatggtccctgcacaggtggaaagaaggacaatgaactggaaagccttcta
gcttctttgaaaatttccaaagaaaatgaagtgcagacttattccaaggaagcgagagct
acaaacgaggaacatctgtcaccacagtcatttgctatgaaaggaacacagatgctcaaa
gagattttgaagatagatggctcagatctgcaaacaaagaatgaagtgaaatcacaaatt
aatgatgttcctgctccctctagtagacaggattgccatggagctgctttgcaattcaga
ccaacaaaaaaaatggctgcttatatgaacaagcatagccctggaggcccccagaacaca
ccagcgatagaaactggaggtcaccctttcacttgtccgcagcctgcactgtctactgtt
tctgagctttctcgtatttgttctcttcttggaatggcacaaccagatttctctttccta
aaaacaccacagaccatgacagtttgccatataaagctgtcaaatggattattggttcac
ggaccacagtgtcattccgaagctgaagcaaaggagaaagccgccctttttgctttacag
cgcttgggttctataggagtaaactttgcttcgcctccacctccaccagtgtttccaaat
taccaaccactaggagttcctgtaccacctgggtcaattcctccagtatttgcacagccc
cctgctaatatgatgcctccatcatctcacatgtttggtccaatgtcctggggaactcca
gtgcctaagcattattatcctggctcctatccaggaaatgtgtctctttcaggaactata
ccagttggttctcacaaccagtttatacctctgcaggtaactaaaaaaagggctgctagc
aagaaaaactttgaactcaaggagtttcagagttcccctcaagctgcaccactaaagaat
gaacagccaatgtcttctgaccacattcagcaagatagttcttcagctcctttaaaatct
cctcaagctgctcaatccactgtttcatttcaagacaatgtggctactccaagtgttcct
cataacaaatcaacaccaaacacttccagcaagcgaaagccaagaaaactggctgtcaat
tttggcgcaccaaaatcttcagaatag
DBGET
integrated database retrieval system
