KEGG   Parus major (Great Tit): 107210260
Entry
107210260         CDS       T04864                                 
Symbol
WDR82
Name
(RefSeq) WD repeat-containing protein 82 isoform X1
  KO
K14962  COMPASS component SWD2
Organism
pmaj  Parus major (Great Tit)
Pathway
pmaj03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pmaj00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    107210260 (WDR82)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pmaj03019]
    107210260 (WDR82)
   03036 Chromosome and associated proteins [BR:pmaj03036]
    107210260 (WDR82)
Messenger RNA biogenesis [BR:pmaj03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     107210260 (WDR82)
Chromosome and associated proteins [BR:pmaj03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     107210260 (WDR82)
    COMPASS/SET1 complex (yeast)
     107210260 (WDR82)
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd ANAPC4_WD40 WDR55 Beta-prop_WDR90_POC16_2nd EIF3I Beta-prop_EML Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd WDR90_beta-prop_4th Beta-prop_WDR19_1st WD40_MABP1-WDR62_1st Beta-prop_SPT8 Beta-prop_RIG_2nd Beta-prop_WDR75_1st WD40_RFWD3 NBCH_WD40 Beta-prop_IFT140_1st PEP5_VPS11_N WD_LRWD1 Beta-prop_WDR35_TULP_N VPS8_N Beta-prop_NUP159_NUP214 Beta-prop_NWD2_C Beta-prop_EIPR1 MinC_C
Other DBs
NCBI-GeneID: 107210260
NCBI-ProteinID: XP_015496304
Ensembl: ENSPMJG00000009855
LinkDB
Position
12:complement(6033237..6051983)
AA seq 313 aa
MKLTDNVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLY
SKKYGVDLIRYTHAANTVVYSSNKIDDTIRYLSLHDNKYIRYFPGHTKRVVALSMSPVDD
TFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFD
KGPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGGFIRLIDAFKGAVLHTFGGYNNSKA
VTLEASFTPDSQFIMIGSEDGKIHVWNGESGMKVAVLDGKHTGPITCLQFNPKFMTFASA
CSNMAFWLPTIDD
NT seq 942 nt   +upstreamnt  +downstreamnt
atgaagctgacggacaacgtgctgcggagcttccgcgtggctaaggtcttccgcgagaac
tcggacaagatcaactgctttgacttcagccccaacggcgagaccgtcatttccagcagc
gacgatgactctatcgttctctatgactgccaggagggcaaaccaaagaggaccctgtac
agtaagaagtatggagtggacctcatcagatacacacatgctgccaacactgtcgtgtac
agctccaacaaaatagatgacacaatccgatacctctccctgcatgacaacaaatacatt
cggtatttcccagggcacacaaaaagagtggttgctctttcaatgtctccagtggatgat
acttttatttctggatctctggataaaactattcgactttgggatctccgctctccaaat
tgccagggtttaatgcatctccaaggaaagcccgtgtgttcttttgacccagaagggttg
atttttgctgctggagtcaattctgaaatggtgaagctttatgatctccgttcttttgac
aaggggccatttgctacgtttaagatgcaatatgaccgaacgtgtgagtggacaggcctg
aagttcagcaacgatgggaaactcatcctcatctcaacgaatggcggcttcattcggctg
attgatgccttcaaaggagctgtcctgcacacatttgggggttataacaatagtaaggct
gtcacgctggaggcatcattcacaccagactctcagttcatcatgataggttcggaggat
gggaagatccatgtttggaatggggaaagtgggatgaaggtggctgtcctagatggaaaa
cacacaggccctataacctgtctgcagttcaatccaaaatttatgactttcgctagtgct
tgttccaatatggccttctggttaccaactattgatgactaa

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