Parus major (Great Tit): 107210566
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Entry
107210566 CDS
T04864
Symbol
PCDH1
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
pmaj
Parus major (Great Tit)
Pathway
pmaj03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
107210566 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pmaj01009
]
107210566 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pmaj04515
]
107210566 (PCDH1)
Protein phosphatases and associated proteins [BR:
pmaj01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
107210566 (PCDH1)
Cell adhesion molecules [BR:
pmaj04515
]
Cadherins
Protocadherins
107210566 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
K319L-like_PKD
Cadherin_4
TMEM154
Mid2
MLANA
Syndecan
Motif
Other DBs
NCBI-GeneID:
107210566
NCBI-ProteinID:
XP_015496985
Ensembl:
ENSPMJG00000008064
LinkDB
All DBs
Position
13:15782565..15839061
Genome browser
AA seq
1225 aa
AA seq
DB search
METPRDQRAGARHAARSRHHPTPLQRRMNPLASCLGLWLLCQLPALASGTRAIYKVQEEQ
PPNSLIGSLASDYGLPDMGHLYKLEVGAPYLRVDGKTGDIYTTETSIDRENLRECQHLLP
GEPCFLEFEVSITNLNANSSPRLLEGQIEVLDINDNTPNFASPVLTLSIPENTNIGTLFS
IPLAMDRDSGPNGVASYELMAGPEAQELFGLQVAEDQDEKQPQLIVMGNLDREQWDSYDL
TIKVQDGGNPPRASSALLRITILDMNDNAPKFEKALYEAELSENSPVGHSVLQVKANDSD
QGSNAEIDYSFHQASDMVRRLLRLDRATGLITVQGPIDREDIGTLKFSVMAKDKGANPKS
ARTQVVVTIKDMNDNAPSIEIRGIGLVTHQDGMANISEDVPVETAVALVQVSDRDEGENA
VVTCVVAGDVPFQLRQASETGSDSKKKYFLQTTTPLDYESVKEYTIEIVAVDSGNPPLSS
TNSLKVQVMDVNDNAPVFSQSFTEVAFPENNEPDELVMEVSATDADSGSNAKLVYSLVTD
PSSKGSFTIDPDSGEIRVKAVLDREQRERYEFLVVAEDKGSPSKQGTASVAINVMDRNDN
DPKFMLSGYNFSVMENMPPLSPVGMVTVIDADKGENARIQLSVEQDNGDFVIQNGTGTIL
SSISFDREQQSTYTFRLKAVDGGDPPRSAYVGVTINVLDENDNAPFITSPSNATYKHILP
HTSPGQQVSKVKAEDIDSGINAELIYSITGGNPFELFQISPQSGDITLEKEILRKHHGLH
RLVVRVNDKGKPSRHGTALVHFYVNETLANRTLLDTLVGHSLDTPLDIDIAGDPEYERSK
QRSNILFGVIAGIVAVTLVIVLVVLVRYCRQREAKSGYQAGKKETKDLYAPKQASKSGKS
KSKVKKSKSPKPPKPTEDEEETGLQKSLKFNLMNDSVSDSPRIHLPLNYPPGSPDLGRHY
RSNSPLPSIQLQPQSPSASKKHQVVQDLPATNTFVGTGDNNSTGSEQYSDYSYRTNPQKY
TNKQLPHRRVTFSAASQAQDLQDPSQHSYYDSGLEESETPSSKSSSGPRIGPLALPEDHY
ERTTPDGSIGEMEHPENDLRPLPDVAMTGTCTRECTEFGHSDTCWMPGQSSPSRRPKNAL
KLSTFVPYQDRGSQEQVGNGSPRLSEERSTKMANLRLLPTYSAFSNSSHEPCKDSPMEEI
PLTQTSDFQPATTPSAQTTKREIYL
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atggaaacgccgcgggaccagcgcgcaggggctcggcacgcagcgcggagccggcaccat
ccaactcccctgcagcgcaggatgaacccgctggcgtcctgcctcggcctgtggctcctc
tgccagctcccagccctggcctcggggacacgtgccatctacaaagtgcaggaggaacaa
ccccccaacagcctcatagggagcctggcctccgactacggcttaccggacatggggcac
ctctacaagctggaagtgggggccccgtacctccgtgtggatggcaagacaggggacatc
tacaccacagagacctccatcgaccgggagaacctgcgggagtgccagcacctcctccct
ggagagccctgcttcctggagttcgaggtgtccatcactaacctgaacgccaacagcagc
ccgcgcctgctcgaggggcagatcgaggtgctcgatatcaatgacaacacccccaacttc
gcctcgcccgtcctcaccctctccatccccgaaaacaccaacatcgggacgctcttctcc
atccccctggccatggaccgcgactcaggccccaatggcgttgcctcctacgagctgatg
gctggtccggaggcgcaggagctctttgggctgcaggtggccgaggaccaggatgagaag
cagcctcagctgatcgtcatggggaacctggaccgggagcagtgggactcctacgatctg
accatcaaggtgcaggatgggggaaaccccccgcgggcgagcagtgccctgctccgcatc
accatcctggacatgaacgacaacgcgcccaagttcgagaaggccctgtacgaggcagag
ctctctgaaaacagcccagtggggcactctgtcctccaggtgaaagccaacgattcggac
cagggttccaatgccgagatcgactactccttccaccaggcctcggacatggtgcggcgg
ctgctgcgcctggaccgcgccacggggctcatcaccgtgcagggccccatcgaccgtgag
gacatcggcaccctcaagttctccgtcatggccaaggacaagggcgccaaccccaagagc
gcccgcacgcaggtggtggtcaccatcaaggacatgaacgacaacgcaccctccatagag
attcggggcataggattggtcacccaccaggatggcatggccaacatctcggaggacgtg
ccagtagagacagcagtggctctggtgcaggtgtccgaccgagatgagggtgaaaatgca
gtggtgacctgcgtggtggccggtgacgtcccattccagctgcgccaggccagtgagaca
gggagtgacagcaagaagaaatacttcctgcagaccaccaccccgctggactacgagtcg
gtgaaggagtacacaattgagattgtggccgtggactcggggaacccgcccctctccagc
accaactccttgaaggtgcaggtgatggacgtcaatgataatgcccctgtcttcagccag
agcttcactgaggtggccttccctgagaacaacgagcccgatgagctggtcatggaggtg
agcgccactgatgctgacagtggctccaacgccaagctggtttattccctggtgacagac
ccctcctccaagggctctttcaccattgaccctgactccggggagatccgggtgaaggcg
gtgctggaccgagagcagcgagaacgctacgagttcttggtggtggcagaagataagggc
agccccagcaagcagggcacagcgtccgtggccatcaacgtcatggacaggaatgacaac
gaccccaagttcatgctgagcggctacaacttctcagtgatggagaacatgccgcccctc
agccctgtgggcatggtgacggtcatcgatgctgacaaaggagaaaatgcccggatccag
ctgtcagtggagcaagacaacggggattttgtcatccaaaatggcactggcaccatcctc
tccagcatctctttcgaccgggagcagcagagcacctacaccttccgactcaaggcggtg
gacggtggggatccacccaggtctgcctatgtgggggtgaccatcaacgtcttggatgag
aatgacaatgcccccttcatcacttccccctccaacgccacctacaagcacatcctgccc
cacaccagccctggccagcaggtgagcaaggtcaaggcagaggacatcgactcgggcatc
aatgccgagctgatctacagcatcacaggaggaaacccctttgagctcttccagatctcc
ccgcagagcggagacatcaccctggagaaggagatcctgcgcaagcaccatggcctgcac
cgcctggttgtgcgtgtcaacgacaagggcaagccctcgcggcacggcacggctctggtg
cacttctacgtcaacgagacgctggccaaccgcacgctgctggacacgctggtggggcac
agcctggacaccccactggacatcgacatcgctggcgaccctgagtacgagcgcagcaaa
cagcggagcaacatcctcttcggggtcatcgccggcatcgtggccgtcaccctggtcatc
gtgctggtggtcctggtgcgctactgccggcagcgcgaggccaagagtggctaccaggca
ggcaagaaggagaccaaggacctgtatgcacccaagcaggccagcaagagcgggaagagc
aagagcaaggtgaagaagagcaagtctcccaaacctcccaagcccacagaggatgaggag
gagacagggctgcagaaatcgctcaagttcaacctcatgaacgactccgtcagcgacagc
ccccggatccacctgcccctgaactaccctccgggcagcccggacctgggccgccactac
cgctccaactcaccgctgccctccatccagctgcagcctcagtcaccctccgcctccaag
aagcaccaagtggtgcaggacctgccggccaccaacacctttgttggcaccggggacaac
aactcgacgggctccgagcaatactcggactacagctaccgcaccaacccccagaaatac
accaacaagcagttacctcatcgccgagtgacgttctctgcagccagccaggctcaggac
ctgcaggacccctcccagcacagctactatgacagtgggctggaggaatctgagaccccc
agcagcaaatcttcgtcggggccccgcatcgggcccctggccctgcccgaggaccactac
gagcgcaccacgcctgatggcagcatcggggagatggagcaccctgagaacgatctccgg
cctctgcccgatgtagccatgactgggacctgcacccgggagtgcacagagttcggccac
tccgacacctgctggatgcccggccagtcctcccccagccgcaggcccaagaacgccctc
aaactctccacttttgtgccttaccaagacagagggagtcaagagcaagtcgggaacggc
agccccagactgtcggaagagcgcagcaccaaaatggccaacctccgcctgctccccacg
tacagtgccttctccaatagtagccatgagccctgcaaggactctcccatggaggaaatt
cctctcacccagacctcggacttccagccagccaccaccccgtcggcccagaccaccaag
agggagatctacctgtga
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integrated database retrieval system
