Parus major (Great Tit): 107210716
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Entry
107210716 CDS
T04864
Name
(RefSeq) protocadherin alpha-C1-like isoform X1
KO
K16493
protocadherin alpha
Organism
pmaj
Parus major (Great Tit)
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pmaj03036
]
107210716
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pmaj04515
]
107210716
Chromosome and associated proteins [BR:
pmaj03036
]
Eukaryotic type
Centrosome formation proteins
Other centriole associated proteins
107210716
Cell adhesion molecules [BR:
pmaj04515
]
Cadherins
Protocadherins
107210716
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_tail
Cadherin_2
Cadherin_C_2
Cadherin_3
Motif
Other DBs
NCBI-GeneID:
107210716
NCBI-ProteinID:
XP_015497393
Ensembl:
ENSPMJG00000008116
LinkDB
All DBs
Position
13:complement(16374860..16450383)
Genome browser
AA seq
957 aa
AA seq
DB search
MRGYLMVFCLICCTVDGQIVYSIAEETERGASVGNIAKDLGIDAATLSARKFRMITGSSK
QYFNINASTGALSVNEPIDREQLCELKSVCLLNYELVLENPLELYRMEFKVLDINDNSPS
FPLSEYHINMPEFLSPGARFALPSAQDPDEGANSVQNYTLSPDEHFYLEMQIRGDGSKYP
ELVLKKALDREQQATHRLVLTAKDGGNPPKSGDVPVIVTVLDTNDNAPEFEHSVYRASIL
ENSPSGTLVVQVHATDLDEGPNGEVRYSFSNTTSADLQRMFSIHPHTGEVTVNGVLAVQR
PLLEMLIEARDNGAFGMSSTAKLLVEITDVNNHGPEITITSLSSPIPEDAVPGTVIALLS
ILDKDPGENGKVTCQISENLPFQLKPSLQNYYSLVTSELLDRELISEYNITITATDLGSP
PLTTQKTVWVQISDVNDNAPVFSADAFDVFVEENNPLGAFLYQVSASDPDTGENGRVSYT
LRNSTVAGSALTSFLSMNLANGSIYAKRAFDFEQLRSFHFQVEAKDNGSPALSAAIRVNV
YISDQNDNAPAILYPTSQNGSVAVEVVPRLADEDYLVTKVVADDEDNAQNAWLSYHLAHS
SDSTLFQLSPHTGELRTTRSMRSTDFLKHKVVVVVRDHGDPPLSSTVTVGILLADTLPQA
LPDFDDSGQPPPLLNATNIYLIVSLACVSFIFAAFIFFLAIIRLCRCQTCCCNGCCCPSD
DYKKYCYSVHMLPSSHLPPDMLEVTGVGKLTHTYLYRASVGLGPSNGSIPNGDAGNVPSG
SRLQVPGPCIQVQQVQSDRLSAVLVPKHPNPDWRYSASLRAGMQSAVHMEEAGVLRGGPA
GPDQQWPTVSSATAEPEAGEVSPPVGAGVNSNSWTFKFGPGNSKQGGPGELPDKFIIPGS
PAIISIRQEPPNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTENSDQ
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atgcggggctatttaatggttttctgccttatttgctgcaccgtggacgggcaaatagtg
tattccatcgccgaggaaacagagcgtggagcgtctgttgggaacatagcaaaggattta
ggaatagatgcagctacactttcagctcggaaatttcgcatgatcaccggttcaagtaag
caatattttaatataaatgccagcacaggggctttgtctgttaacgagcccatagacaga
gagcagctttgtgaattaaagtctgtctgtcttctgaattatgaactcgtgttagaaaac
cctctagagctttataggatggaattcaaagtcttggacataaatgacaactcccccagc
tttcccttaagtgaatatcatataaacatgcctgagttcctgtcacctggggcacggttt
gcactccccagtgcccaagatcctgatgaaggtgctaacagtgtccagaattatactctg
agccccgatgaacatttctatttggaaatgcagatccgcggggatgggagtaaatatcct
gaattggtgctgaagaaagccttagacagggagcagcaagccactcacagacttgtgctt
acagccaaagatggtgggaatcctccaaagtctggtgatgtcccggtcattgtgactgtg
ctggacaccaatgacaatgcaccagaatttgagcactcggtctacagggcgagtatcttg
gaaaactcccccagtggcactttggtagtccaagtgcacgccacagacttggatgaaggt
ccaaatggagaggtcaggtattcctttagcaatacaacttctgctgacttacagcgaatg
ttctcaattcacccacacaccggggaggtgacagtcaatggcgttttagctgttcagaga
ccccttctcgagatgctcattgaggcaagagataatggggcatttggcatgtccagcaca
gctaagctgctggtggaaatcacagatgtgaacaatcatggcccagagattacaattaca
tccctttccagtcccattcctgaggatgctgttcctggcacggtgatagccctgctgagt
attttggataaggaccctggggagaatgggaaagtaacctgccagatctctgaaaacctt
cccttccagttaaagccttcccttcaaaactactacagccttgtcaccagcgagcttctg
gaccgagagctgatcagtgagtacaacatcaccattactgccacagacttgggttctcct
cctctcaccactcagaagactgtttgggtgcagatttctgacgtgaatgataacgcccct
gtcttcagtgctgacgcattcgatgtgtttgtggaggagaacaatccacttggtgctttt
ctctaccaggtctcggcatctgaccctgatacaggggagaatggacgggtctcttacact
ctcaggaattccacagttgcaggcagtgccctgaccagctttttgtctatgaacttggcc
aatgggagcatctatgcaaaacgtgcctttgattttgagcagcttaggagcttccacttc
caagtggaagccaaggacaatgggtcaccagccttgagtgctgccataagagtgaatgtt
tacatctcagaccagaatgacaatgccccggccatcctgtaccccaccagccagaatggc
tctgtagctgtggaagttgtgccccgcctggctgatgaggactacctggtgaccaaagtg
gtggcagatgacgaggacaatgcacagaatgcttggctttcctatcaccttgcccattcc
tctgactccaccctgttccagctgtcaccgcacaccggcgagctgcgcaccacgcgctcc
atgcgctccaccgacttcctcaagcacaaggtggtcgtggtggtgcgggaccacggggat
ccgccgctctcctccactgtcacggtgggcatcctgctggctgacaccctgccccaggca
ctgccggactttgatgacagcgggcagccgccaccgctactcaacgccacaaacatctac
ttgatcgtttcccttgcctgtgtctcgttcatctttgcagcgttcatcttcttcctcgcc
atcatccggctgtgccggtgccagacttgctgctgcaatggctgctgctgcccatctgat
gactataaaaagtattgctacagtgtgcacatgcttcccagctcccacctgccaccggac
atgctggaggtcactggcgtgggcaaactcactcacacctacttgtacagggcatctgta
ggtcttgggcctagtaacggcagcatcccaaatggagatgctgggaatgttcctagtggc
tcaaggttacaagtgccaggaccctgcatccaagtgcagcaggtccaaagtgaccggttg
agtgctgtcctcgtgccaaaacatcccaatccggactggcgctactctgcgtccctgagg
gcaggaatgcaaagtgctgtgcatatggaggaggcaggagtcctgcgtggaggaccagca
gggcctgaccagcagtggccaacagtctccagtgctacagcagaacctgaggcgggagag
gtgtcccccccagtgggagctggtgtgaacagcaacagctggacctttaaatttggaccg
ggcaattccaaacaaggtggtcctggtgagttgccagacaaattcattatcccaggatct
cctgcaatcatctccatccggcaggagccaccaaacagccaaattgacaaaagtgacttc
ataacctttggcaagaaagaagagaccaagaaaaagaagaaaaagaagaagggaaacaag
actcaggagaaaaaagaaaagggcaacagcaccactgagaacagtgaccagtga
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